CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19650.1	CDY21807	AT3G48100.1	18642946
AT5G19650.1	CDY36905	AT3G48100.1	18642946
AT5G19650.1	CDY54257	AT3G48100.1	18642946
AT5G19650.1	CDY59856	AT3G48100.1	18642946
AT5G19650.1	CDY68129	AT3G48100.1	18642946
AT5G19650.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58970	Canola	mitochondrion	99.07	99.07
Bra002252.1-P	Field mustard	mitochondrion	98.13	98.59
CDY44933	Canola	mitochondrion	83.64	86.89
CDY42284	Canola	mitochondrion	81.78	84.54
AT5G19650.1	Thale cress	mitochondrion, nucleus	78.5	76.02
Os05t0583600-01	Rice	cytosol	14.95	47.76
CDY32706	Canola	cytosol	9.35	40.0
CDY02814	Canola	cytosol	8.88	38.0
KRH60283	Soybean	mitochondrion, nucleus	43.46	32.63
KRH41574	Soybean	mitochondrion, nucleus	43.93	32.08
GSMUA_Achr11P...	Banana	nucleus	23.36	31.85
GSMUA_Achr2P19920_001	Banana	nucleus	25.23	28.12
CDX75076	Canola	nucleus	21.96	25.27
PGSC0003DMT400000838	Potato	nucleus	32.71	25.0
KXG20752	Sorghum	cytosol, nucleus	19.16	23.16
CDY43753	Canola	nucleus	19.63	22.58
GSMUA_Achr9P05500_001	Banana	nucleus	31.78	20.8
Os01t0226700-01	Rice	mitochondrion, nucleus	23.83	20.4
GSMUA_Achr8P15960_001	Banana	nucleus	33.64	20.28
CDY36485	Canola	nucleus	28.5	19.55
GSMUA_Achr1P04990_001	Banana	nucleus	27.1	19.53
CDY29238	Canola	nucleus, plastid	27.57	19.47
CDY72229	Canola	nucleus	28.5	19.43
CDY43893	Canola	nucleus	28.5	19.37
CDY59540	Canola	plastid	25.7	19.03
TraesCS3D01G159700.1	Wheat	mitochondrion, nucleus	29.91	18.23
CDX84837	Canola	nucleus	20.09	17.92
TraesCS3A01G151800.1	Wheat	nucleus, plastid	29.44	17.85
TraesCS3B01G178800.1	Wheat	nucleus	29.44	17.8
HORVU3Hr1G030870.1	Barley	nucleus	29.44	17.6
Zm00001d037814_P001	Maize	plastid	22.9	17.25
EES17897	Sorghum	nucleus, plastid	24.3	17.22
CDY10735	Canola	nucleus	23.36	16.18
Zm00001d039313_P001	Maize	mitochondrion	28.5	16.18
TraesCS3A01G228900.1	Wheat	nucleus	24.77	15.96
TraesCS3D01G227100.1	Wheat	nucleus	24.77	15.96
EES02214	Sorghum	mitochondrion, nucleus	28.04	15.87
CDY43860	Canola	nucleus	21.5	15.86
OQU78505	Sorghum	nucleus	26.64	15.83
CDY32990	Canola	nucleus	21.03	15.73
CDY04827	Canola	nucleus	18.69	15.56
TraesCS3B01G255700.1	Wheat	nucleus	24.3	15.52
HORVU3Hr1G055980.1	Barley	nucleus	24.3	15.48
CDY02063	Canola	nucleus	22.43	15.43
CDY09258	Canola	mitochondrion	22.9	15.31
Os01t0625900-01	Rice	nucleus	26.17	15.3
CDX97830	Canola	nucleus	21.96	14.83
CDY29674	Canola	nucleus	22.43	14.81
CDY62219	Canola	nucleus	21.03	14.56
KXG33158	Sorghum	cytosol, plastid	9.35	14.39
CDY06241	Canola	mitochondrion	20.09	14.29
EES03313	Sorghum	nucleus	27.57	14.22
CDY09945	Canola	nucleus, plastid	19.63	13.95
CDY67505	Canola	nucleus, plastid	19.16	13.62
CDX99420	Canola	mitochondrion	20.09	13.15
Zm00001d011410_P001	Maize	nucleus, plastid	24.3	13.03
CDY01560	Canola	nucleus	21.5	12.92
CDX78899	Canola	mitochondrion	19.63	12.88
CDY32705	Canola	mitochondrion	12.15	12.87
Zm00001d044167_P001	Maize	mitochondrion, nucleus	25.23	12.68
CDY02815	Canola	plastid	10.75	11.62
CDY62560	Canola	nucleus	19.63	8.9

Protein Annotations

EnsemblPlants:CDX92512	EnsemblPlantsGene:GSBRNA2T00154291001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF24	PFAM:PF04844	PFscan:PS51754	ProteinID:CDX92512	ProteinID:CDX92512.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI0004EED05E	MapMan:15.5.37	:	:	:

Description

BnaA10g15510D

Coordinates

chrLK031872:+:1014720..1015364

Molecular Weight (calculated)

24588.8 Da

IEP (calculated)

9.259

GRAVY (calculated)

-0.667

Length

214 amino acids

Sequence
(BLAST)

001: MEKRMRLRVP RIVRSSLSSC RPRDLHDVVD TSAVASQTTS SDRFFLTEPK AKTPRVDRHK PKPNTFSAFP PNPFYEGSRS FRDSKKNIKT RRKQRSSQFG
101: SDSLIASRFK SSGSWCWSCS EDEEEESDDR DTLFSSRSFS SESSKGESFA VVKKSEDPYE DFRTSMVEMI VERQIFAAAE LQKLLQCFLS LNSLQHHSVI
201: VQVFLEIYAT LFSP

Best Arabidopsis Sequence Match ( AT5G19650.1 )
(BLAST)

001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P

Arabidopsis Description

OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.