CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX78407
CDX80491
CDX83145
CDX88165
CDX93852
CDY13472
CDY34012
CDY45968
CDY64892
CDY66559
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30400.1	CDX93852	AT1G62990.1	15781858
AT2G30400.1	CDY45968	AT1G62990.1	15781858
AT2G30400.1	CDY64892	AT1G62990.1	15781858
AT2G30400.1	CDY66559	AT1G62990.1	15781858
AT2G30400.1	CDX83145	AT4G08150.1	15781858
AT2G30400.1	CDY34012	AT4G08150.1	15781858
AT2G30400.1	CDY68624	AT4G08150.1	15781858
AT2G30400.1	CDX68812	AT4G32040.1	15781858
AT2G30400.1	CDX72343	AT4G32040.1	15781858
AT2G30400.1	CDX75215	AT4G32040.1	15781858
AT2G30400.1	CDY13472	AT4G32040.1	15781858
AT2G30400.1	CDX78407	AT5G11060.1	15781858
AT2G30400.1	CDX80491	AT5G25220.1	15781858
AT2G30400.1	CDX88165	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022796.1-P	Field mustard	nucleus	95.83	74.68
CDY62219	Canola	nucleus	95.83	74.43
CDY10735	Canola	nucleus	81.25	63.11
CDY02063	Canola	nucleus	78.33	60.45
CDY32706	Canola	cytosol	12.5	60.0
AT2G30400.1	Thale cress	nucleus	76.25	57.19
CDY02814	Canola	cytosol	11.67	56.0
CDX97830	Canola	nucleus	72.5	54.89
CDY29674	Canola	nucleus	71.67	53.09
CDY06241	Canola	mitochondrion	56.67	45.18
CDY09945	Canola	nucleus, plastid	56.25	44.85
CDY67505	Canola	nucleus, plastid	55.42	44.19
CDY04827	Canola	nucleus	32.08	29.96
CDY32990	Canola	nucleus	32.08	26.92
CDY43860	Canola	nucleus	32.5	26.9
CDX75076	Canola	nucleus	17.5	22.58
CDY43753	Canola	nucleus	17.5	22.58
GSMUA_Achr3P09850_001	Banana	mitochondrion	27.92	21.14
CDY44933	Canola	mitochondrion	17.92	20.87
CDY42284	Canola	mitochondrion	17.5	20.29
CDX92512	Canola	mitochondrion	17.92	20.09
CDY58970	Canola	mitochondrion	17.92	20.09
CDY09258	Canola	mitochondrion	25.0	18.75
CDX78899	Canola	mitochondrion	22.08	16.26
CDY01560	Canola	nucleus	23.33	15.73
CDX99420	Canola	mitochondrion	21.25	15.6
CDY32705	Canola	mitochondrion	12.5	14.85
CDY59540	Canola	plastid	17.5	14.53
CDY29238	Canola	nucleus, plastid	17.5	13.86
CDY36485	Canola	nucleus	17.92	13.78
CDY43893	Canola	nucleus	17.92	13.65
CDY72229	Canola	nucleus	17.5	13.38
CDY02815	Canola	plastid	10.83	13.13
CDY62560	Canola	nucleus	19.17	9.75

Protein Annotations

MapMan:15.5.37	GO:A0A078D6N5	EnsemblPlants:CDX84837	ProteinID:CDX84837	ProteinID:CDX84837.1	InterPro:DNA_bnd_dom_ovate
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00142151001	InterPro:IPR006458
InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF22	TIGRFAMs:TIGR01568	UniParc:UPI0004EE39A7	SEG:seg	:	:

Description

BnaA03g13930D

Coordinates

chrLK031838:-:1497276..1498205

Molecular Weight (calculated)

27769.2 Da

IEP (calculated)

10.511

GRAVY (calculated)

-0.922

Length

240 amino acids

Sequence
(BLAST)

001: MGNYKFKISD MIPNAWLHKL KDMTKQSKPK HKPSSCSSNT CNKKKPSSDS PLLHHSSTFR FSNSLVPNSP HRNSPRSSLY TKRKSKRKTL YKLSFKPITP
101: PFASESSTQS LFPALESSPD NLIKKPIRGH LSVKINKEKE YDECRAEKRY QNQVSSGRKS TSRSESKQVV LESFAVVKRS VDPKKDFRES MVEMIEENNI
201: RASKDLEDLL ACYLSLNPKE YHDLIIHVFE QIWRQFTKTK

Best Arabidopsis Sequence Match ( AT5G01840.1 )
(BLAST)

001: MGNNYRFKLS ELIPNAWFYK LRDMSKSKKK NLQSQPNSTT SKKKHHAVPT PTSTTPLSPR PPRRPSHSSK APPSHPPRKS SGNRLRHRAT VDSKSSTTSG
101: DSTTTETGSF SPDFRSDQVL LPDESLTGSW HSPCSSKLSK TATFTPPPEL ELRPIITKTA ATARKTAVNS PAGVRLRMRS PRISVSSSAR RSGSSARRSR
201: AVVKASVDPK RDFKESMEEM IAENKIRATK DLEELLACYL CLNSDEYHAI IINVFKQIWL DLNLPPPHSK

Arabidopsis Description

OFP1Transcription repressor OFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.