Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44933 | Canola | mitochondrion | 97.58 | 98.06 |
| Bra020055.1-P | Field mustard | mitochondrion | 96.62 | 97.09 |
| CDY58970 | Canola | mitochondrion | 84.54 | 81.78 |
| CDX92512 | Canola | mitochondrion | 84.54 | 81.78 |
| AT5G19650.1 | Thale cress | mitochondrion, nucleus | 76.81 | 71.95 |
| Os05t0583600-01 | Rice | cytosol | 15.46 | 47.76 |
| CDY32706 | Canola | cytosol | 9.66 | 40.0 |
| CDY02814 | Canola | cytosol | 9.18 | 38.0 |
| GSMUA_Achr11P... | Banana | nucleus | 23.19 | 30.57 |
| KRH60283 | Soybean | mitochondrion, nucleus | 41.06 | 29.82 |
| KRH41574 | Soybean | mitochondrion, nucleus | 41.55 | 29.35 |
| GSMUA_Achr2P19920_001 | Banana | nucleus | 24.64 | 26.56 |
| PGSC0003DMT400000838 | Potato | nucleus | 33.82 | 25.0 |
| CDX75076 | Canola | nucleus | 21.74 | 24.19 |
| KXG20752 | Sorghum | cytosol, nucleus | 18.84 | 22.03 |
| CDY43753 | Canola | nucleus | 19.32 | 21.51 |
| Os01t0226700-01 | Rice | mitochondrion, nucleus | 23.67 | 19.6 |
| GSMUA_Achr9P05500_001 | Banana | nucleus | 30.92 | 19.57 |
| CDY72229 | Canola | nucleus | 28.02 | 18.47 |
| CDY36485 | Canola | nucleus | 27.54 | 18.27 |
| CDY29238 | Canola | nucleus, plastid | 26.57 | 18.15 |
| CDY43893 | Canola | nucleus | 27.54 | 18.1 |
| GSMUA_Achr8P15960_001 | Banana | nucleus | 30.92 | 18.03 |
| CDY59540 | Canola | plastid | 25.12 | 17.99 |
| TraesCS3A01G151800.1 | Wheat | nucleus, plastid | 30.43 | 17.85 |
| GSMUA_Achr1P04990_001 | Banana | nucleus | 25.6 | 17.85 |
| TraesCS3D01G159700.1 | Wheat | mitochondrion, nucleus | 29.95 | 17.66 |
| CDX84837 | Canola | nucleus | 20.29 | 17.5 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 29.47 | 17.23 |
| EES17897 | Sorghum | nucleus, plastid | 25.12 | 17.22 |
| HORVU3Hr1G030870.1 | Barley | nucleus | 29.47 | 17.04 |
| Zm00001d037814_P001 | Maize | plastid | 23.19 | 16.9 |
| TraesCS3D01G227100.1 | Wheat | nucleus | 26.57 | 16.57 |
| TraesCS3A01G228900.1 | Wheat | nucleus | 26.57 | 16.57 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 26.57 | 16.42 |
| CDY10735 | Canola | nucleus | 24.15 | 16.18 |
| HORVU3Hr1G055980.1 | Barley | nucleus | 26.09 | 16.07 |
| CDY04827 | Canola | nucleus | 19.81 | 15.95 |
| CDY43860 | Canola | nucleus | 22.22 | 15.86 |
| OQU78505 | Sorghum | nucleus | 27.54 | 15.83 |
| Zm00001d039313_P001 | Maize | mitochondrion | 28.5 | 15.65 |
| EES02214 | Sorghum | mitochondrion, nucleus | 28.5 | 15.61 |
| Os01t0625900-01 | Rice | nucleus | 27.54 | 15.57 |
| CDX97830 | Canola | nucleus | 23.67 | 15.46 |
| CDY02063 | Canola | nucleus | 23.19 | 15.43 |
| CDY32990 | Canola | nucleus | 21.26 | 15.38 |
| CDY29674 | Canola | nucleus | 23.67 | 15.12 |
| CDY62219 | Canola | nucleus | 21.26 | 14.24 |
| CDY09258 | Canola | mitochondrion | 21.74 | 14.06 |
| CDY06241 | Canola | mitochondrion | 20.29 | 13.95 |
| KXG33158 | Sorghum | cytosol, plastid | 9.18 | 13.67 |
| CDY09945 | Canola | nucleus, plastid | 19.81 | 13.62 |
| CDY67505 | Canola | nucleus, plastid | 19.32 | 13.29 |
| EES03313 | Sorghum | nucleus | 26.57 | 13.25 |
| CDY32705 | Canola | mitochondrion | 12.56 | 12.87 |
| Zm00001d044167_P001 | Maize | mitochondrion, nucleus | 26.09 | 12.68 |
| CDX99420 | Canola | mitochondrion | 19.81 | 12.54 |
| Zm00001d011410_P001 | Maize | nucleus, plastid | 24.15 | 12.53 |
| CDX78899 | Canola | mitochondrion | 19.32 | 12.27 |
| CDY01560 | Canola | nucleus | 20.77 | 12.08 |
| CDY02815 | Canola | plastid | 10.63 | 11.11 |
| CDY62560 | Canola | nucleus | 19.32 | 8.47 |
Protein Annotations
| EnsemblPlants:CDY42284 | EnsemblPlantsGene:GSBRNA2T00074522001 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF24 | PFAM:PF04844 | PFscan:PS51754 | ProteinID:CDY42284 | ProteinID:CDY42284.1 | SEG:seg |
| TIGRFAMs:TIGR01568 | UniParc:UPI0004EE9CCD | UniProt:A0A078HY65 | MapMan:15.5.37 | : | : |
Description
BnaC02g08900DBnaC02g08900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY65]
Coordinates
chrLK032520:-:94609..95232
Molecular Weight (calculated)
23812.1 Da
IEP (calculated)
9.618
GRAVY (calculated)
-0.556
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKRMRLRVP SIVRSSLNSC RSRGLYDVVD TSAVASHTTS SERFFLTKAP RVDSHKPQPY AFPPNPFYEG SRSFRDIRKK IKTKRKQQRS SQFGSDPLLT
101: SSFKSSGSWC WSCSEEEEES DDRDTLVSSR SFSSDYSKGE SFAVVKKSHD PYKDFRKSMV EMIVERQIFA AVELQQLLQC FLSLNSLQHQ SVIIQVFLEI
201: YATLFST
101: SSFKSSGSWC WSCSEEEEES DDRDTLVSSR SFSSDYSKGE SFAVVKKSHD PYKDFRKSMV EMIVERQIFA AVELQQLLQC FLSLNSLQHQ SVIIQVFLEI
201: YATLFST
001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P
Arabidopsis Description
OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.