CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02815	Canola	plastid	60.89	62.12
CDY32706	Canola	cytosol	3.47	14.0
CDY32990	Canola	nucleus	19.31	13.64
CDY43860	Canola	nucleus	19.31	13.45
CDY06241	Canola	mitochondrion	18.81	12.62
CDY44933	Canola	mitochondrion	12.87	12.62
CDY42284	Canola	mitochondrion	12.87	12.56
CDX84837	Canola	nucleus	14.85	12.5
CDY10735	Canola	nucleus	18.81	12.3
CDY02063	Canola	nucleus	18.81	12.22
CDX92512	Canola	mitochondrion	12.87	12.15
CDY58970	Canola	mitochondrion	12.87	12.15
CDY02814	Canola	cytosol	2.97	12.0
CDY09945	Canola	nucleus, plastid	17.82	11.96
CDY04827	Canola	nucleus	14.85	11.67
CDY67505	Canola	nucleus, plastid	16.83	11.3
CDY62219	Canola	nucleus	16.34	10.68
CDY29674	Canola	nucleus	16.83	10.49
CDX97830	Canola	nucleus	16.34	10.41
CDX75076	Canola	nucleus	9.41	10.22
CDY43753	Canola	nucleus	8.91	9.68
CDX99420	Canola	mitochondrion	13.86	8.56
CDX78899	Canola	mitochondrion	13.37	8.28
CDY72229	Canola	nucleus	12.87	8.28
CDY09258	Canola	mitochondrion	12.87	8.12
CDY59540	Canola	plastid	11.39	7.96
CDY43893	Canola	nucleus	12.38	7.94
CDY29238	Canola	nucleus, plastid	11.88	7.92
CDY36485	Canola	nucleus	11.88	7.69
CDY01560	Canola	nucleus	13.37	7.58
CDY62560	Canola	nucleus	14.85	6.36
PGSC0003DMT400037629	Potato	plastid	11.88	5.69
Solyc08g068170.1.1	Tomato	plastid	11.88	4.76

Protein Annotations

EnsemblPlants:CDY32705	EnsemblPlantsGene:GSBRNA2T00052755001	GO:A0A078H261	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:DNA_bnd_dom_ovate	PFAM:PF13724	ProteinID:CDY32705	ProteinID:CDY32705.1	SEG:seg
UniParc:UPI0004EECF5D	UniProt:A0A078H261	MapMan:35.2	:	:	:

Description

BnaA02g07670DBnaA02g07670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H261]

Coordinates

chrLK032298:+:290658..291322

Molecular Weight (calculated)

22380.9 Da

IEP (calculated)

10.288

GRAVY (calculated)

-0.808

Length

202 amino acids

Sequence
(BLAST)

001: MNQKMGTHKF RFSGIMPHSW LYKLKGISRS SRKRLPSSPK HLSSTDASSS RKLRETLLLS SSVHHPQSSS PPPIYKPSSR LKLSSSSLNS HVTLTTYRNH
101: RSVLTSVNAI ILDPPLSSHV SLTSSWSHRS KSTVGSSSKP VSSSPSDQNY GFSHEPESKS VDIKALNSVD SEDPSISDNS KTEETESWFF RDKDSGEFTE
201: ES

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.