CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX93852
CDY13472
CDY45968
CDY64892
CDY66559

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58360.1	CDX93852	AT1G62990.1	15781858
AT5G58360.1	CDY45968	AT1G62990.1	15781858
AT5G58360.1	CDY64892	AT1G62990.1	15781858
AT5G58360.1	CDY66559	AT1G62990.1	15781858
AT5G58360.1	CDX68812	AT4G32040.1	15781858
AT5G58360.1	CDX72343	AT4G32040.1	15781858
AT5G58360.1	CDX75215	AT4G32040.1	15781858
AT5G58360.1	CDY13472	AT4G32040.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02814	Canola	cytosol	96.0	96.0
CDY32990	Canola	nucleus	90.0	15.73
CDY43860	Canola	nucleus	90.0	15.52
AT5G58360.1	Thale cress	nucleus	82.0	13.85
CDX84837	Canola	nucleus	60.0	12.5
CDY43753	Canola	nucleus	44.0	11.83
CDX75076	Canola	nucleus	42.0	11.29
CDY04827	Canola	nucleus	58.0	11.28
GSMUA_Achr3P09850_001	Banana	mitochondrion	68.0	10.73
CDY44933	Canola	mitochondrion	42.0	10.19
CDY10735	Canola	nucleus	62.0	10.03
CDY29674	Canola	nucleus	64.0	9.88
CDX97830	Canola	nucleus	62.0	9.78
CDY42284	Canola	mitochondrion	40.0	9.66
CDY02063	Canola	nucleus	60.0	9.65
Solyc06g082460.1.1	Tomato	nucleus	66.0	9.4
PGSC0003DMT400078126	Potato	nucleus	66.0	9.4
KRH72818	Soybean	nucleus	72.0	9.4
CDY62219	Canola	nucleus	58.0	9.39
CDY58970	Canola	mitochondrion	40.0	9.35
CDX92512	Canola	mitochondrion	40.0	9.35
KRH17171	Soybean	nucleus, plastid	68.0	9.09
CDY67505	Canola	nucleus, plastid	52.0	8.64
KRG98156	Soybean	nucleus	64.0	8.31
CDY06241	Canola	mitochondrion	50.0	8.31
CDY09945	Canola	nucleus, plastid	50.0	8.31
CDY59540	Canola	plastid	46.0	7.96
CDX78899	Canola	mitochondrion	48.0	7.36
CDX99420	Canola	mitochondrion	48.0	7.34
CDY43893	Canola	nucleus	46.0	7.3
CDY29238	Canola	nucleus, plastid	44.0	7.26
CDY09258	Canola	mitochondrion	46.0	7.19
CDY36485	Canola	nucleus	44.0	7.05
CDY72229	Canola	nucleus	44.0	7.01
CDY01560	Canola	nucleus	44.0	6.18
KRH30114	Soybean	nucleus	44.0	6.01
CDY02815	Canola	plastid	18.0	4.55
CDY32705	Canola	mitochondrion	14.0	3.47
CDY62560	Canola	nucleus	26.0	2.75

Protein Annotations

EnsemblPlants:CDY32706	EnsemblPlantsGene:GSBRNA2T00052756001	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF38	PFAM:PF04844	PFscan:PS51754	ProteinID:CDY32706	ProteinID:CDY32706.1	TIGRFAMs:TIGR01568
UniParc:UPI0004EE5296	UniProt:A0A078H4D3	MapMan:15.5.37	:	:	:

Description

BnaA02g07680DBnaA02g07680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4D3]

Coordinates

chrLK032298:+:291432..291584

Molecular Weight (calculated)

5973.2 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.110

Length

50 amino acids

Sequence
(BLAST)

1: MVEMIVENKM KEQTDLEDLL ACYLSLNSSE YHDIIIKAFE KTWFHLTHLT

Best Arabidopsis Sequence Match ( AT5G58360.1 )
(BLAST)

001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL

Arabidopsis Description

OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.