Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32706 | Canola | cytosol | 96.0 | 96.0 |
| CDY32990 | Canola | nucleus | 86.0 | 15.04 |
| CDY43860 | Canola | nucleus | 86.0 | 14.83 |
| AT5G58360.1 | Thale cress | nucleus | 78.0 | 13.18 |
| CDY43753 | Canola | nucleus | 44.0 | 11.83 |
| CDX84837 | Canola | nucleus | 56.0 | 11.67 |
| CDX75076 | Canola | nucleus | 42.0 | 11.29 |
| CDY04827 | Canola | nucleus | 58.0 | 11.28 |
| GSMUA_Achr3P09850_001 | Banana | mitochondrion | 64.0 | 10.09 |
| CDY44933 | Canola | mitochondrion | 40.0 | 9.71 |
| PGSC0003DMT400078126 | Potato | nucleus | 68.0 | 9.69 |
| Solyc06g082460.1.1 | Tomato | nucleus | 66.0 | 9.4 |
| CDY10735 | Canola | nucleus | 58.0 | 9.39 |
| CDY29674 | Canola | nucleus | 60.0 | 9.26 |
| CDY42284 | Canola | mitochondrion | 38.0 | 9.18 |
| CDX97830 | Canola | nucleus | 58.0 | 9.15 |
| KRH72818 | Soybean | nucleus | 70.0 | 9.14 |
| CDY62219 | Canola | nucleus | 56.0 | 9.06 |
| CDY02063 | Canola | nucleus | 56.0 | 9.0 |
| CDX92512 | Canola | mitochondrion | 38.0 | 8.88 |
| CDY58970 | Canola | mitochondrion | 38.0 | 8.88 |
| KRH17171 | Soybean | nucleus, plastid | 66.0 | 8.82 |
| CDY67505 | Canola | nucleus, plastid | 50.0 | 8.31 |
| KRG98156 | Soybean | nucleus | 62.0 | 8.05 |
| CDY09945 | Canola | nucleus, plastid | 48.0 | 7.97 |
| CDY06241 | Canola | mitochondrion | 48.0 | 7.97 |
| CDY59540 | Canola | plastid | 46.0 | 7.96 |
| CDX78899 | Canola | mitochondrion | 48.0 | 7.36 |
| CDX99420 | Canola | mitochondrion | 48.0 | 7.34 |
| CDY43893 | Canola | nucleus | 46.0 | 7.3 |
| CDY29238 | Canola | nucleus, plastid | 44.0 | 7.26 |
| CDY36485 | Canola | nucleus | 44.0 | 7.05 |
| CDY72229 | Canola | nucleus | 44.0 | 7.01 |
| CDY09258 | Canola | mitochondrion | 44.0 | 6.88 |
| CDY01560 | Canola | nucleus | 44.0 | 6.18 |
| KRH30114 | Soybean | nucleus | 42.0 | 5.74 |
| CDY02815 | Canola | plastid | 16.0 | 4.04 |
| CDY32705 | Canola | mitochondrion | 12.0 | 2.97 |
| CDY62560 | Canola | nucleus | 26.0 | 2.75 |
Protein Annotations
| EnsemblPlants:CDY02814 | EnsemblPlantsGene:GSBRNA2T00114991001 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF38 | PFAM:PF04844 | PFscan:PS51754 | ProteinID:CDY02814 | ProteinID:CDY02814.1 | TIGRFAMs:TIGR01568 |
| UniParc:UPI0004EBF63C | MapMan:15.5.37 | : | : | : | : |
Description
BnaC02g10750D
Coordinates
chrLK031937:-:562816..562968
Molecular Weight (calculated)
5931.1 Da
IEP (calculated)
4.598
GRAVY (calculated)
-0.160
Length
50 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEMIVENKM KEQTDLEDLL ACYLSLNSSE YHDIIIKAFE KTWFHLSHLT
001: MKQKMGTHKF RFSDMMPHSW LYKLKGMSRS SRKHHLSSPK HLSSADASSS RKLRDPLRRL SSTAHHPQAS NSPPKSSSFK RKIKRKTVYK PSSRLKLSTS
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL
101: SSLNHRSKSS SSANAISDSA VGSFLDRVSS PSDQNFVHDP EPHSSIDIKD ELSVRKLDDV PEDPSVSPNL SPETAKEPPF EMMTQQKLKK PKAHSSGIKI
201: PTKIVRKKKK ERTSQVSKKK GVVKSFAIVL SSVDPEKDFR ESMVEMIMEN KMREQKDLED LLACYLSLNS SEYHDVIIKA FENTWLHLTQ GLSISL
Arabidopsis Description
OFP3Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.