CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68812
CDX72343
CDX75215
CDX78407
CDX80491
CDX83145
CDX88165
CDX93852
CDY13472
CDY34012
CDY44476
CDY45383
CDY45968
CDY64892
CDY66559
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06920.1	CDX93852	AT1G62990.1	15781858
AT1G06920.1	CDY45968	AT1G62990.1	15781858
AT1G06920.1	CDY64892	AT1G62990.1	15781858
AT1G06920.1	CDY66559	AT1G62990.1	15781858
AT1G06920.1	CDX83145	AT4G08150.1	15781858
AT1G06920.1	CDY34012	AT4G08150.1	15781858
AT1G06920.1	CDY68624	AT4G08150.1	15781858
AT1G06920.1	CDX68812	AT4G32040.1	15781858
AT1G06920.1	CDX72343	AT4G32040.1	15781858
AT1G06920.1	CDX75215	AT4G32040.1	15781858
AT1G06920.1	CDY13472	AT4G32040.1	15781858
AT1G06920.1	CDX78407	AT5G11060.1	15781858
AT1G06920.1	CDX80491	AT5G25220.1	15781858
AT1G06920.1	CDX88165	AT5G25220.1	15781858
AT1G06920.1	CDY44476	AT5G41410.1	15781858
AT1G06920.1	CDY45383	AT5G41410.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06241	Canola	mitochondrion	97.67	97.67
Bra031546.1-P	Field mustard	mitochondrion, nucleus, plastid	94.35	94.35
CDY67505	Canola	nucleus, plastid	94.35	94.35
AT1G06920.1	Thale cress	mitochondrion, nucleus, plastid	69.44	66.35
CDX84837	Canola	nucleus	44.85	56.25
CDY10735	Canola	nucleus	53.82	52.43
CDY02063	Canola	nucleus	53.82	52.09
CDY62219	Canola	nucleus	53.16	51.78
CDX97830	Canola	nucleus	52.82	50.16
CDY32706	Canola	cytosol	8.31	50.0
CDY29674	Canola	nucleus	52.49	48.77
CDY02814	Canola	cytosol	7.97	48.0
CDY04827	Canola	nucleus	24.25	28.4
CDY32990	Canola	nucleus	25.58	26.92
CDY43860	Canola	nucleus	25.91	26.9
GSMUA_Achr3P09850_001	Banana	mitochondrion	28.24	26.81
CDX75076	Canola	nucleus	14.95	24.19
CDY43753	Canola	nucleus	13.62	22.04
CDY44933	Canola	mitochondrion	14.29	20.87
CDY42284	Canola	mitochondrion	13.62	19.81
CDX92512	Canola	mitochondrion	13.95	19.63
CDY58970	Canola	mitochondrion	13.95	19.63
CDY09258	Canola	mitochondrion	19.6	18.44
CDX99420	Canola	mitochondrion	19.6	18.04
CDY32705	Canola	mitochondrion	11.96	17.82
CDX78899	Canola	mitochondrion	18.94	17.48
CDY01560	Canola	nucleus	20.6	17.42
CDY59540	Canola	plastid	14.29	14.88
CDY43893	Canola	nucleus	14.29	13.65
CDY29238	Canola	nucleus, plastid	13.62	13.53
CDY36485	Canola	nucleus	13.95	13.46
CDY72229	Canola	nucleus	13.95	13.38
CDY02815	Canola	plastid	8.31	12.63
CDY62560	Canola	nucleus	18.27	11.65

Protein Annotations

MapMan:15.5.37	GO:A0A078F636	UniProt:A0A078F636	EnsemblPlants:CDY09945	ProteinID:CDY09945	ProteinID:CDY09945.1
InterPro:DNA_bnd_dom_ovate	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	EnsemblPlantsGene:GSBRNA2T00031716001
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754
PANTHER:PTHR33057	PANTHER:PTHR33057:SF22	TIGRFAMs:TIGR01568	UniParc:UPI0004EF32D6	SEG:seg	:

Description

BnaC08g45060DBnaC08g45060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F636]

Coordinates

chrLK032000:+:200244..201149

Molecular Weight (calculated)

34409.2 Da

IEP (calculated)

11.099

GRAVY (calculated)

-0.911

Length

301 amino acids

Sequence
(BLAST)

001: MRDYNFKFSA MIPSQWLHKL KNMTKPRKKY PLPSSCSLNT TKKTKASSES NKSLPHSSRT YFSSRSHTSL ESKILRNSPR NSHHVIESKR KTVYKPSPPP
101: SSSVSASFNK KKINFPPTQD SSSSASSNVI DMNSRDFKKR MFKEMKVFDS TEKACPASNR TKTSRKPHHL SVKVNNKEKE EACRIKKNVS NGRRSSSNSP
201: RIKIKVSSPR VQVSARRSKS RSQSKQVLDS FAVMKSSLDP KKDFRESMVE MIEENNIRAS QDLRELLACY LSLNPKEHHD LILKVFVQVW LEVINSKVAS
301: K

Best Arabidopsis Sequence Match ( AT1G06920.1 )
(BLAST)

001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK

Arabidopsis Description

OFP4Transcription repressor OFP4 [Source:UniProtKB/Swiss-Prot;Acc:F4HNU8]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.