CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71279
CDX78407
CDX80798
CDX84837
CDX87287
CDX97830
CDY02063
CDY04827
CDY06241
CDY09945
CDY10473
CDY10735
CDY29674
CDY37564
CDY40327
CDY41111
CDY44476
CDY45383
CDY46209
CDY48107
CDY55113
CDY58777
CDY62219
CDY67505
CDY69132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25220.1	CDY06241	AT1G06920.1	15781858
AT5G25220.1	CDY09945	AT1G06920.1	15781858
AT5G25220.1	CDY67505	AT1G06920.1	15781858
AT5G25220.1	CDX87287	AT1G79960.1	15781858
AT5G25220.1	CDY37564	AT1G79960.1	15781858
AT5G25220.1	CDY41111	AT1G79960.1	15781858
AT5G25220.1	CDY58777	AT1G79960.1	15781858
AT5G25220.1	CDX71279	AT2G16400.1	15781858
AT5G25220.1	CDY46209	AT2G16400.1	15781858
AT5G25220.1	CDX84837	AT2G30400.1	15781858
AT5G25220.1	CDX97830	AT2G30400.1	15781858
AT5G25220.1	CDY02063	AT2G30400.1	15781858
AT5G25220.1	CDY10735	AT2G30400.1	15781858
AT5G25220.1	CDY29674	AT2G30400.1	15781858
AT5G25220.1	CDY62219	AT2G30400.1	15781858
AT5G25220.1	CDY04827	AT5G01840.1	15781858
AT5G25220.1	CDX80798	AT5G02030.1	15781858
AT5G25220.1	CDY10473	AT5G02030.1	15781858
AT5G25220.1	CDY40327	AT5G02030.1	15781858
AT5G25220.1	CDY48107	AT5G02030.1	15781858
AT5G25220.1	CDY55113	AT5G02030.1	15781858
AT5G25220.1	CDY69132	AT5G02030.1	15781858
AT5G25220.1	CDX78407	AT5G11060.1	15781858
AT5G25220.1	CDY44476	AT5G41410.1	11701881
AT5G25220.1	CDY45383	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88165	Canola	nucleus	65.77	97.66
TraesCS5B01G454600.1	Wheat	nucleus	33.33	84.09
TraesCS6D01G134800.1	Wheat	nucleus	36.26	77.78
Bra009826.1-P	Field mustard	nucleus	71.4	76.57
CDY05371	Canola	nucleus	68.02	74.75
AT5G25220.1	Thale cress	nucleus	71.17	73.32
CDY05480	Canola	nucleus	68.69	72.62
CDX85732	Canola	nucleus	63.06	71.25
CDX78407	Canola	nucleus	61.49	70.73
CDY51104	Canola	nucleus	62.39	70.48
Solyc08g041820.2.1	Tomato	nucleus	54.05	68.77
TraesCS6B01G173900.1	Wheat	nucleus	45.72	68.12
OQU84501	Sorghum	nucleus	46.85	67.97
TraesCS1B01G135600.1	Wheat	nucleus	42.57	67.26
TraesCS6A01G145500.1	Wheat	nucleus	46.17	66.99
TraesCS7D01G501000.1	Wheat	nucleus	46.62	66.99
PGSC0003DMT400040351	Potato	nucleus	54.95	66.85
KXG20488	Sorghum	nucleus	47.52	66.14
Zm00001d046568_P001	Maize	nucleus	47.07	66.14
Os02t0182800-01	Rice	nucleus	46.4	65.81
HORVU6Hr1G028610.2	Barley	nucleus	45.72	65.7
Os06t0646600-01	Rice	nucleus	47.75	65.63
CDX93852	Canola	nucleus	32.43	64.86
Zm00001d053749_P002	Maize	nucleus	46.4	64.58
Zm00001d015549_P001	Maize	nucleus	46.62	63.69
CDY66559	Canola	nucleus	41.89	63.27
CDY64892	Canola	nucleus	41.67	62.93
CDY45968	Canola	nucleus	41.44	62.8
CDX70374	Canola	nucleus	41.89	61.59
TraesCS7B01G423100.2	Wheat	nucleus	46.17	61.19
HORVU7Hr1G114650.2	Barley	nucleus	44.14	60.68
CDX68812	Canola	nucleus	48.87	58.02
CDX75215	Canola	nucleus	48.65	57.75
CDY13472	Canola	nucleus	47.75	55.5
CDX72343	Canola	nucleus	47.97	53.25
TraesCS7A01G511800.2	Wheat	nucleus	47.07	52.25
CDY41449	Canola	nucleus	10.81	39.67
CDY34012	Canola	nucleus	12.84	29.53
CDX91713	Canola	nucleus	19.14	27.07
CDY03742	Canola	nucleus	18.92	25.69
CDY69524	Canola	nucleus	11.71	25.49
CDY09448	Canola	nucleus	18.69	25.38
CDY70923	Canola	nucleus	11.26	24.39
CDX83145	Canola	nucleus	20.05	22.14
CDY19545	Canola	nucleus	18.24	21.15
CDY12943	Canola	nucleus	18.24	21.15
CDY68624	Canola	nucleus	14.41	18.34
CDY04722	Canola	nucleus	9.01	18.1
CDY41448	Canola	nucleus	8.33	17.79
CDY44142	Canola	nucleus	9.23	17.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078CTK4	EnsemblPlants:CDX80491	ProteinID:CDX80491	ProteinID:CDX80491.1
ncoils:Coil	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00133586001	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213
PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256
SUPFAM:SSF46689	UniParc:UPI0004EDEA8B	SEG:seg	:	:	:

Description

BnaC07g29530D

Coordinates

chrLK031821:+:904552..909686

Molecular Weight (calculated)

48910.6 Da

IEP (calculated)

5.014

GRAVY (calculated)

-0.552

Length

444 amino acids

Sequence
(BLAST)

001: MSAVSEGPAA EGCWTVWLEG EWGEDSVERT ETLVRLRRLE EVVGERMGNS SKERVGSGSG GSGGMRFLLS PVEEDDGGEA EARRLKSHGF LCGLIIETYE
101: TIVIRSRDSP SPPLSLSLSL SLSLSNNNAA VVGDVIDDVT GGGAEQMMSG GENKNDGGGG EGVVSWQNAR HKSEILSHPL YEQLLSAHVA CLRIATPVDQ
201: LPRIDAQLAQ SQHVVAKYST LCGGGQGLVG GDDKELDQFM THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGMGA TMSDDEDEQV
301: ESDANMFDGG LDVLGFGPLI PTESERSLME RVRQELKHEL KQGYKEKIVD IREEIMRKRR AGKLPGDTTS VLKGWWQSHS KWPYPTEEDK ARLVQETGLQ
401: LKQINNWFIN QRKRNWHSNP SSSTVLKNKR KSNAGDNSGR ERFT

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.