Factsheet for Os06t0646600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0848400-01
Os02t0182800-01
Os02t0226600-01
Os03t0123500-02
Os03t0124000-01
Os03t0673000-00
Os03t0673500-00
Os03t0680800-02
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os05t0455200-01
Os06t0108900-02
Os06t0562300-00
Os06t0646600-01
Os07t0129700-01
Os10t0534900-01
Os12t0636200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32040.1	Os03t0123500-02	AT1G62990.1	15781858
AT4G32040.1	Os03t0680800-02	AT2G16400.1	15781858
AT4G32040.1	Os12t0636200-01	AT2G16400.1	15781858
AT4G32040.1	Os02t0182800-01	AT4G32040.1	15781858
AT4G32040.1	Os06t0646600-01	AT4G32040.1	15781858
AT4G32040.1	Os01t0848400-01	AT5G02030.1	15781858
AT4G32040.1	Os05t0455200-01	AT5G02030.1	15781858
AT4G32040.1	Os03t0124000-01	AT5G41410.1	11701881
AT4G32040.1	Os06t0108900-02	AT5G41410.1	11701881
AT4G32040.1	Os10t0534900-01	AT5G41410.1	11701881
AT4G32040.1	Os03t0124000-01	AT5G41410.1	17873098
AT4G32040.1	Os06t0108900-02	AT5G41410.1	17873098
AT4G32040.1	Os10t0534900-01	AT5G41410.1	17873098
AT5G11060.1	Os03t0123500-02	AT1G62990.1	15781858
AT5G11060.1	Os03t0673000-00	AT4G08150.1	15781858
AT5G11060.1	Os03t0673500-00	AT4G08150.1	15781858
AT5G11060.1	Os03t0727000-02	AT4G08150.1	15781858
AT5G11060.1	Os03t0727200-00	AT4G08150.1	15781858
AT5G11060.1	Os03t0771500-01	AT4G08150.1	15781858
AT5G11060.1	Os03t0772100-00	AT4G08150.1	15781858
AT5G11060.1	Os07t0129700-01	AT4G08150.1	15781858
AT5G11060.1	Os02t0226600-01	AT4G32980.1	15781858
AT5G11060.1	Os06t0562300-00	AT4G32980.1	15781858
AT5G11060.1	Os02t0182800-01	AT5G25220.1	15781858
AT5G11060.1	Os06t0646600-01	AT5G25220.1	15781858
AT5G11060.1	Os03t0124000-01	AT5G41410.1	11701881
AT5G11060.1	Os06t0108900-02	AT5G41410.1	11701881
AT5G11060.1	Os10t0534900-01	AT5G41410.1	11701881
AT5G25220.1	Os03t0680800-02	AT2G16400.1	15781858
AT5G25220.1	Os12t0636200-01	AT2G16400.1	15781858
AT5G25220.1	Os01t0848400-01	AT5G02030.1	15781858
AT5G25220.1	Os05t0455200-01	AT5G02030.1	15781858
AT5G25220.1	Os02t0182800-01	AT5G11060.1	15781858
AT5G25220.1	Os06t0646600-01	AT5G11060.1	15781858
AT5G25220.1	Os03t0124000-01	AT5G41410.1	11701881
AT5G25220.1	Os06t0108900-02	AT5G41410.1	11701881
AT5G25220.1	Os10t0534900-01	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G454600.1	Wheat	nucleus	52.63	96.59
KXG20488	Sorghum	nucleus	91.02	92.16
Zm00001d046568_P001	Maize	nucleus	88.85	90.82
TraesCS7D01G501000.1	Wheat	nucleus	85.45	89.32
Os02t0182800-01	Rice	nucleus	84.21	86.9
TraesCS1B01G135600.1	Wheat	nucleus	73.37	84.34
Os08t0292900-01	Rice	nucleus, plasma membrane	53.25	81.52
TraesCS7B01G423100.2	Wheat	nucleus	83.9	80.9
HORVU7Hr1G114650.2	Barley	nucleus	74.92	74.92
CDX88165	Canola	nucleus	65.94	71.24
TraesCS7A01G511800.2	Wheat	nucleus	86.07	69.5
Solyc08g041820.2.1	Tomato	nucleus	64.09	59.31
PGSC0003DMT400040351	Potato	nucleus	65.02	57.53
KRG98594	Soybean	extracellular	14.55	57.32
Os03t0123500-02	Rice	nucleus	54.49	56.05
CDX78407	Canola	nucleus	65.94	55.18
Bra006085.1-P	Field mustard	nucleus	65.94	55.18
CDY05371	Canola	nucleus	68.42	54.7
KRH05245	Soybean	nucleus	68.73	54.01
Bra028554.1-P	Field mustard	nucleus	64.71	54.01
AT5G11060.1	Thale cress	nucleus	65.63	53.94
CDY51104	Canola	nucleus	65.63	53.94
CDX85732	Canola	nucleus	65.63	53.94
KRH52385	Soybean	nucleus	65.63	53.27
KRH61712	Soybean	nucleus	67.49	53.04
CDX75215	Canola	nucleus	60.99	52.67
KRH15810	Soybean	nucleus	67.18	52.67
CDY05480	Canola	nucleus	68.11	52.38
Bra011317.1-P	Field mustard	nucleus	60.37	52.14
CDX68812	Canola	nucleus	60.37	52.14
AT5G25220.1	Thale cress	nucleus	69.04	51.74
AT4G32040.1	Thale cress	nucleus	61.3	51.7
CDY13472	Canola	nucleus	60.99	51.57
Bra023965.1-P	Field mustard	nucleus	60.68	51.17
VIT_04s0008g06130.t01	Wine grape	nucleus	67.49	51.05
Os03t0673000-00	Rice	nucleus	12.07	50.65
Bra009826.1-P	Field mustard	nucleus	64.71	50.48
CDX72343	Canola	nucleus	61.3	49.5
CDX80491	Canola	nucleus	65.63	47.75
Bra020491.1-P	Field mustard	nucleus	56.97	46.82
CDX70374	Canola	nucleus	43.03	46.03
Os01t0302500-01	Rice	nucleus	29.41	31.56
Os05t0129700-01	Rice	nucleus	29.72	30.87
Os03t0727000-02	Rice	nucleus	30.34	27.15
Os07t0129700-01	Rice	nucleus	28.79	26.2
Os03t0771500-01	Rice	nucleus	26.01	25.0
Os03t0727200-00	Rice	nucleus	27.24	24.11
Os03t0673500-00	Rice	nucleus	23.84	22.38
Os03t0772100-00	Rice	vacuole	21.98	17.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:4341661	EMBL:AB007628	EMBL:AB061818	EMBL:AK241438
EMBL:AK289177	ProteinID:BAD37316.1	ProteinID:BAD37613.1	ProteinID:BAF20114.1	ProteinID:BAS98866.1	ProteinID:BAS98867.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EnsemblPlantsGene:Os06g0646600	EnsemblPlants:Os06t0646600-01
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213
PANTHER:PTHR11850	PANTHER:PTHR11850:SF133	UniProt:Q94LW4	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0001884452	RefSeq:XP_015644389.1	RefSeq:XP_015644390.1	SEG:seg

Description

HOMEOBOX ORYZA SATIVA59Similar to Homeobox protein knotted-1-like 11. (Os06t0646600-01);Similar to cDNA, clone: J065162G03, full insert sequence. (Os06t0646600-02)

Coordinates

chr6:-:26411491..26414775

Molecular Weight (calculated)

35108.2 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.566

Length

323 amino acids

Sequence
(BLAST)

001: MAFHYQDHAL AMDAAAAAAE TGGHHHPGFV GAGGVVGGGG GGGWEREKAA IAAHPLYERL LEAHVACLRV ATPVDQLPRI DAQIAARPPP LAAATAAAAA
101: AAAGGAPSGG EELDLFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE QTLQSLTGAS PREGSGATMS DDEDNQVDSE SNMFDGNDGS DGMGFGPLML
201: TEGERSLVER VRQELKHELK QGYREKLVDI REEILRKRRA GKLPGDTAST LKAWWQAHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPA
301: SSSSDKSKRK RSNAGDGKAE QSW

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.