CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03996
KRH05496
KRH27902
KRH27981
KRH41225
KRH52190
KRH57265
KRH59951
KRH61471
KRH61499
KRH77464
KRH77572

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11060.1	KRH03996	AT1G62990.1	15781858
AT5G11060.1	KRH27981	AT1G62990.1	15781858
AT5G11060.1	KRH57265	AT1G62990.1	15781858
AT5G11060.1	KRH77464	AT1G62990.1	15781858
AT5G11060.1	KRH61471	AT4G08150.1	15781858
AT5G11060.1	KRH05496	AT4G32980.1	15781858
AT5G11060.1	KRH52190	AT4G32980.1	15781858
AT5G11060.1	KRH61499	AT4G32980.1	15781858
AT5G11060.1	KRH27902	AT5G41410.1	11701881
AT5G11060.1	KRH41225	AT5G41410.1	11701881
AT5G11060.1	KRH59951	AT5G41410.1	11701881
AT5G11060.1	KRH77572	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15810	Soybean	nucleus	90.75	90.53
TraesCS5B01G454600.1	Wheat	nucleus	36.74	85.8
TraesCS6D01G134800.1	Wheat	nucleus	39.9	79.23
KRH52385	Soybean	nucleus	73.24	75.63
KRH61712	Soybean	nucleus	74.21	74.21
Solyc08g041820.2.1	Tomato	nucleus	60.58	71.35
KRH03552	Soybean	nucleus	58.88	70.14
KRH20116	Soybean	nucleus	58.88	69.94
OQU84501	Sorghum	nucleus	51.82	69.61
CDY05371	Canola	nucleus	68.13	69.31
TraesCS7D01G501000.1	Wheat	nucleus	52.07	69.26
PGSC0003DMT400040351	Potato	nucleus	61.31	69.04
TraesCS1B01G135600.1	Wheat	nucleus	47.2	69.04
KXG20488	Sorghum	nucleus	53.53	68.97
TraesCS6B01G173900.1	Wheat	nucleus	49.88	68.79
Os06t0646600-01	Rice	nucleus	54.01	68.73
Os02t0182800-01	Rice	nucleus	52.31	68.69
Zm00001d046568_P001	Maize	nucleus	52.8	68.67
TraesCS6A01G145500.1	Wheat	nucleus	51.09	68.63
Bra006085.1-P	Field mustard	nucleus	64.23	68.39
CDX78407	Canola	nucleus	64.23	68.39
KRH77464	Soybean	nucleus	46.72	68.33
KRH12889	Soybean	nucleus	61.07	67.84
KRH27981	Soybean	nucleus	45.99	67.74
AT5G11060.1	Thale cress	nucleus	64.72	67.68
KRH37876	Soybean	nucleus	60.58	67.48
HORVU6Hr1G028610.2	Barley	nucleus	50.61	67.31
CDY05480	Canola	nucleus	68.13	66.67
Zm00001d053749_P002	Maize	nucleus	51.58	66.46
KRH03996	Soybean	nucleus	46.96	66.1
KRH57265	Soybean	nucleus	46.96	65.87
Zm00001d015549_P001	Maize	nucleus	51.82	65.54
KRG98594	Soybean	extracellular	12.9	64.63
TraesCS7B01G423100.2	Wheat	nucleus	51.82	63.58
HORVU7Hr1G114650.2	Barley	nucleus	48.42	61.61
TraesCS7A01G511800.2	Wheat	nucleus	51.82	53.25
KRG99390	Soybean	nucleus	11.92	37.4
KRH73380	Soybean	nucleus	5.35	33.85
KRH33819	Soybean	nucleus	22.14	30.74
KRH02013	Soybean	nucleus	19.46	29.74
KRH68434	Soybean	nucleus	21.65	28.99
KRG90534	Soybean	nucleus	21.41	28.66
KRG96717	Soybean	nucleus	21.41	28.3
KRH63561	Soybean	nucleus	18.98	28.06
KRH69600	Soybean	nucleus	20.44	27.27
KRH74562	Soybean	nucleus	20.44	27.18
KRH45633	Soybean	nucleus	20.19	25.86
KRH15482	Soybean	nucleus	23.36	24.94
KRG88661	Soybean	nucleus	23.11	24.55
KRH11492	Soybean	nucleus	21.9	24.0
KRH61471	Soybean	nucleus	20.68	23.55
KRH36506	Soybean	nucleus	21.65	23.48
KRH51140	Soybean	nucleus	20.68	23.48
KRH14756	Soybean	nucleus	18.25	23.08
KRH73381	Soybean	cytosol	11.44	20.43
KRG99387	Soybean	nucleus	8.03	17.19

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100784317	MapMan:15.5.3.4	UniProt:A0A0K2CT26	EMBL:ACUP02010711	InterPro:ELK_dom
EnsemblPlantsGene:GLYMA_17G215500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1MWX1	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EnsemblPlants:KRH05245	ProteinID:KRH05245	ProteinID:KRH05245.1
EMBL:KT031174	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00023D6487	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:36212924..36217325

Molecular Weight (calculated)

46086.0 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.693

Length

411 amino acids

Sequence
(BLAST)

001: MAYHNHHNLS QQDLPPLHHF PNQSMLPDQQ LLPSSPEPNS KPPSDPHPLQ TAPNWLNDAL LRTHYTDTTN TATVATNSNV NVKVNGSNFL KLNPGASDAQ
101: WLARPALHRH PGEVIDDGAG ESMVEHADLK DGGGDAVSWQ IGRCKTEILQ HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK YAVFGHNNIV
201: ADDKELDQFM SHYVLLLCSF KEQLQQHVRV HAMEAVMACW ELEQSLQSLT GVSPGEGTGA TMSDDENDQV DSDANLFDCS FDGADSMGFG PLVPTESERS
301: LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH SNPSTSTALK
401: SKRKRSNAGD N

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.