CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05480	Canola	nucleus	97.52	93.81
CDX88165	Canola	nucleus	69.31	93.65
TraesCS5B01G454600.1	Wheat	nucleus	37.38	85.8
CDX78407	Canola	nucleus	78.96	82.64
CDX85732	Canola	nucleus	78.71	80.92
CDY51104	Canola	nucleus	78.22	80.41
TraesCS6D01G134800.1	Wheat	nucleus	39.85	77.78
CDX70374	Canola	nucleus	55.94	74.83
Solyc08g041820.2.1	Tomato	nucleus	62.13	71.92
OQU84501	Sorghum	nucleus	53.22	70.26
Os02t0182800-01	Rice	nucleus	54.21	69.97
PGSC0003DMT400040351	Potato	nucleus	63.12	69.86
Zm00001d046568_P001	Maize	nucleus	54.46	69.62
KXG20488	Sorghum	nucleus	54.95	69.59
TraesCS6A01G145500.1	Wheat	nucleus	52.48	69.28
TraesCS7D01G501000.1	Wheat	nucleus	52.97	69.26
TraesCS6B01G173900.1	Wheat	nucleus	50.99	69.13
TraesCS1B01G135600.1	Wheat	nucleus	47.77	68.68
Os06t0646600-01	Rice	nucleus	54.7	68.42
KRH05245	Soybean	nucleus	69.31	68.13
CDX80491	Canola	nucleus	74.75	68.02
HORVU6Hr1G028610.2	Barley	nucleus	51.98	67.96
Zm00001d053749_P002	Maize	nucleus	52.72	66.77
Zm00001d015549_P001	Maize	nucleus	53.22	66.15
CDX93852	Canola	nucleus	35.4	64.41
TraesCS7B01G423100.2	Wheat	nucleus	52.48	63.28
CDY66559	Canola	nucleus	45.79	62.93
CDY64892	Canola	nucleus	45.54	62.59
CDY45968	Canola	nucleus	45.3	62.46
HORVU7Hr1G114650.2	Barley	nucleus	49.26	61.61
CDX68812	Canola	nucleus	56.93	61.5
CDX75215	Canola	nucleus	56.44	60.96
CDY13472	Canola	nucleus	55.94	59.16
CDX72343	Canola	nucleus	55.45	56.0
TraesCS7A01G511800.2	Wheat	nucleus	52.72	53.25
CDY41449	Canola	nucleus	11.88	39.67
CDX91713	Canola	nucleus	23.02	29.62
CDY34012	Canola	nucleus	14.11	29.53
CDY03742	Canola	nucleus	21.78	26.91
CDY09448	Canola	nucleus	21.53	26.61
CDY69524	Canola	nucleus	12.62	25.0
CDY70923	Canola	nucleus	12.13	23.9
CDX83145	Canola	nucleus	22.52	22.64
CDY12943	Canola	nucleus	21.04	22.19
CDY19545	Canola	nucleus	21.04	22.19
CDY04722	Canola	nucleus	12.13	22.17
CDY41448	Canola	nucleus	11.39	22.12
CDY44142	Canola	nucleus	12.38	21.28
CDY68624	Canola	nucleus	16.58	19.2

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078EVT4	EnsemblPlants:CDY05371	ProteinID:CDY05371	ProteinID:CDY05371.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00120243001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI0004EE9A96	SEG:seg	:	:	:	:

Description

BnaC02g40790D

Coordinates

chrLK031961:-:696980..699687

Molecular Weight (calculated)

44845.1 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.742

Length

404 amino acids

Sequence
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ DGPPPPPSQQ QQHFHDPPPP NWLNTALLRS DNNNNFLNLH TSAATTSDSP SSAAANQWLP RSSSILQRTE NNNSSGAAVV
101: IDEGGAETMI GGENKNDGGG GAVSWQNARQ KAEILSHPLY EQLLSAHVAC LRTATPVDQL PRIDAQLAQS QNVVAQYSAL GAGQGLVGDD KELDQFMTHY
201: VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DDEDEQQVES DANMFDGGGG LDVLGFGPLV PTESERSLME RVRQELKHEL
301: KQGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTVLKNKR KNNAGDSSGR
401: ERFT

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.