CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05371	Canola	nucleus	93.81	97.52
CDX88165	Canola	nucleus	67.38	94.65
TraesCS5B01G454600.1	Wheat	nucleus	35.95	85.8
CDX78407	Canola	nucleus	76.67	83.42
CDX85732	Canola	nucleus	76.67	81.93
CDY51104	Canola	nucleus	76.43	81.68
TraesCS6D01G134800.1	Wheat	nucleus	38.33	77.78
CDX70374	Canola	nucleus	54.52	75.83
Solyc08g041820.2.1	Tomato	nucleus	59.76	71.92
PGSC0003DMT400040351	Potato	nucleus	61.19	70.41
OQU84501	Sorghum	nucleus	50.95	69.93
Os02t0182800-01	Rice	nucleus	51.67	69.33
Zm00001d046568_P001	Maize	nucleus	52.14	69.3
KXG20488	Sorghum	nucleus	52.62	69.28
TraesCS7D01G501000.1	Wheat	nucleus	50.95	69.26
TraesCS6A01G145500.1	Wheat	nucleus	50.24	68.95
TraesCS6B01G173900.1	Wheat	nucleus	48.81	68.79
CDX80491	Canola	nucleus	72.62	68.69
TraesCS1B01G135600.1	Wheat	nucleus	45.71	68.33
KRH05245	Soybean	nucleus	66.67	68.13
Os06t0646600-01	Rice	nucleus	52.38	68.11
HORVU6Hr1G028610.2	Barley	nucleus	49.76	67.64
Zm00001d053749_P002	Maize	nucleus	50.48	66.46
Zm00001d015549_P001	Maize	nucleus	50.95	65.85
CDX93852	Canola	nucleus	34.05	64.41
CDY66559	Canola	nucleus	44.52	63.61
CDY64892	Canola	nucleus	44.29	63.27
TraesCS7B01G423100.2	Wheat	nucleus	50.24	62.99
CDY45968	Canola	nucleus	43.81	62.8
CDX68812	Canola	nucleus	54.76	61.5
HORVU7Hr1G114650.2	Barley	nucleus	47.14	61.3
CDX75215	Canola	nucleus	54.29	60.96
CDY13472	Canola	nucleus	53.81	59.16
CDX72343	Canola	nucleus	53.33	56.0
TraesCS7A01G511800.2	Wheat	nucleus	50.48	53.0
CDY41449	Canola	nucleus	11.43	39.67
CDY34012	Canola	nucleus	13.57	29.53
CDX91713	Canola	nucleus	21.9	29.3
CDY03742	Canola	nucleus	20.71	26.61
CDY09448	Canola	nucleus	20.48	26.3
CDY69524	Canola	nucleus	12.14	25.0
CDY70923	Canola	nucleus	11.67	23.9
CDX83145	Canola	nucleus	21.67	22.64
CDY12943	Canola	nucleus	20.48	22.45
CDY19545	Canola	nucleus	20.48	22.45
CDY04722	Canola	nucleus	11.43	21.72
CDY41448	Canola	nucleus	10.71	21.63
CDY44142	Canola	nucleus	11.67	20.85
CDY68624	Canola	nucleus	15.95	19.2

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	GO:A0A078ETT6	EnsemblPlants:CDY05480	ProteinID:CDY05480	ProteinID:CDY05480.1
InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00120401001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF95	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI0004EDD049	SEG:seg	:	:	:	:

Description

BnaA02g32110D

Coordinates

chrLK031962:+:380057..382586

Molecular Weight (calculated)

46287.8 Da

IEP (calculated)

5.876

GRAVY (calculated)

-0.708

Length

420 amino acids

Sequence
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ DGPPPPPPQQ QQQQQHFHDA PPPNWLNTAL LRSDNNNFLN LQTSAANTTA ATTSDSPSSA AANQWLPRSS SILQRAENNN
101: SSGAAVVVDE GGAETMIGGE NKNDGGGGGA ATAAEGVVSW QNARQKAEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSALGAGQG
201: LVGDDDKQLD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TGATMSDDED EQQVESDANM FDGGGGLDVL GFGPLVPTES
301: ERSLMERVRQ ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSSST
401: VLKNKRKNNA GDSSGRERFT

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.