Factsheet for Os02t0182800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0848400-01
Os02t0182800-01
Os02t0226600-01
Os03t0123500-02
Os03t0124000-01
Os03t0673000-00
Os03t0673500-00
Os03t0680800-02
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os05t0455200-01
Os06t0108900-02
Os06t0562300-00
Os06t0646600-01
Os07t0129700-01
Os10t0534900-01
Os12t0636200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32040.1	Os03t0123500-02	AT1G62990.1	15781858
AT4G32040.1	Os03t0680800-02	AT2G16400.1	15781858
AT4G32040.1	Os12t0636200-01	AT2G16400.1	15781858
AT4G32040.1	Os02t0182800-01	AT4G32040.1	15781858
AT4G32040.1	Os06t0646600-01	AT4G32040.1	15781858
AT4G32040.1	Os01t0848400-01	AT5G02030.1	15781858
AT4G32040.1	Os05t0455200-01	AT5G02030.1	15781858
AT4G32040.1	Os03t0124000-01	AT5G41410.1	11701881
AT4G32040.1	Os06t0108900-02	AT5G41410.1	11701881
AT4G32040.1	Os10t0534900-01	AT5G41410.1	11701881
AT4G32040.1	Os03t0124000-01	AT5G41410.1	17873098
AT4G32040.1	Os06t0108900-02	AT5G41410.1	17873098
AT4G32040.1	Os10t0534900-01	AT5G41410.1	17873098
AT5G11060.1	Os03t0123500-02	AT1G62990.1	15781858
AT5G11060.1	Os03t0673000-00	AT4G08150.1	15781858
AT5G11060.1	Os03t0673500-00	AT4G08150.1	15781858
AT5G11060.1	Os03t0727000-02	AT4G08150.1	15781858
AT5G11060.1	Os03t0727200-00	AT4G08150.1	15781858
AT5G11060.1	Os03t0771500-01	AT4G08150.1	15781858
AT5G11060.1	Os03t0772100-00	AT4G08150.1	15781858
AT5G11060.1	Os07t0129700-01	AT4G08150.1	15781858
AT5G11060.1	Os02t0226600-01	AT4G32980.1	15781858
AT5G11060.1	Os06t0562300-00	AT4G32980.1	15781858
AT5G11060.1	Os02t0182800-01	AT5G25220.1	15781858
AT5G11060.1	Os06t0646600-01	AT5G25220.1	15781858
AT5G11060.1	Os03t0124000-01	AT5G41410.1	11701881
AT5G11060.1	Os06t0108900-02	AT5G41410.1	11701881
AT5G11060.1	Os10t0534900-01	AT5G41410.1	11701881
AT5G25220.1	Os03t0680800-02	AT2G16400.1	15781858
AT5G25220.1	Os12t0636200-01	AT2G16400.1	15781858
AT5G25220.1	Os01t0848400-01	AT5G02030.1	15781858
AT5G25220.1	Os05t0455200-01	AT5G02030.1	15781858
AT5G25220.1	Os02t0182800-01	AT5G11060.1	15781858
AT5G25220.1	Os06t0646600-01	AT5G11060.1	15781858
AT5G25220.1	Os03t0124000-01	AT5G41410.1	11701881
AT5G25220.1	Os06t0108900-02	AT5G41410.1	11701881
AT5G25220.1	Os10t0534900-01	AT5G41410.1	11701881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G028610.2	Barley	nucleus	92.65	93.85
TraesCS6A01G145500.1	Wheat	nucleus	91.69	93.79
TraesCS6B01G173900.1	Wheat	nucleus	88.82	93.29
TraesCS6D01G134800.1	Wheat	nucleus	61.66	93.24
OQU84501	Sorghum	nucleus	89.46	91.5
Zm00001d053749_P002	Maize	nucleus	88.5	86.83
Zm00001d015549_P001	Maize	nucleus	89.78	86.46
Os06t0646600-01	Rice	nucleus	86.9	84.21
Os08t0292900-01	Rice	nucleus, plasma membrane	53.99	80.09
CDX88165	Canola	nucleus	66.13	69.23
KRG98594	Soybean	extracellular	15.65	59.76
Solyc08g041820.2.1	Tomato	nucleus	64.54	57.88
Os03t0123500-02	Rice	nucleus	56.23	56.05
PGSC0003DMT400040351	Potato	nucleus	65.18	55.89
CDY05371	Canola	nucleus	69.97	54.21
Bra006085.1-P	Field mustard	nucleus	66.77	54.15
CDX78407	Canola	nucleus	66.77	54.15
KRH52385	Soybean	nucleus	67.73	53.27
Bra028554.1-P	Field mustard	nucleus	65.5	52.97
AT5G11060.1	Thale cress	nucleus	66.45	52.93
CDY51104	Canola	nucleus	66.13	52.67
CDX85732	Canola	nucleus	66.13	52.67
KRH61712	Soybean	nucleus	69.01	52.55
KRH05245	Soybean	nucleus	68.69	52.31
KRH15810	Soybean	nucleus	68.05	51.7
CDY05480	Canola	nucleus	69.33	51.67
Os03t0673000-00	Rice	nucleus	12.46	50.65
CDX75215	Canola	nucleus	60.38	50.53
AT5G25220.1	Thale cress	nucleus	69.33	50.35
Bra011317.1-P	Field mustard	nucleus	60.06	50.27
CDX68812	Canola	nucleus	60.06	50.27
AT4G32040.1	Thale cress	nucleus	61.34	50.13
VIT_04s0008g06130.t01	Wine grape	nucleus	67.73	49.65
Bra009826.1-P	Field mustard	nucleus	65.5	49.52
CDY13472	Canola	nucleus	60.38	49.48
Bra023965.1-P	Field mustard	nucleus	60.38	49.35
CDX72343	Canola	nucleus	61.02	47.75
CDX80491	Canola	nucleus	65.81	46.4
Bra020491.1-P	Field mustard	nucleus	58.15	46.31
CDX70374	Canola	nucleus	42.49	44.04
Os01t0302500-01	Rice	nucleus	30.67	31.89
Os05t0129700-01	Rice	nucleus	30.35	30.55
Os07t0129700-01	Rice	nucleus	29.07	25.63
Os03t0727000-02	Rice	nucleus	29.07	25.21
Os03t0771500-01	Rice	nucleus	26.2	24.4
Os03t0727200-00	Rice	nucleus	27.16	23.29
Os03t0673500-00	Rice	nucleus	24.6	22.38
Os03t0772100-00	Rice	vacuole	23.32	17.55

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:4328520	EMBL:AB007627	EMBL:AB061817	EMBL:AK243352
ProteinID:BAF08015.1	ProteinID:BAS77320.1	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	EnsemblPlantsGene:Os02g0182800	EnsemblPlants:Os02t0182800-01	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791
PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF142	UniProt:Q0E3C3
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000188444F
RefSeq:XP_015626237.1	RefSeq:XP_015626238.1	SEG:seg	:	:	:

Description

HOMEOBOX ORYZA SATIVA 58Similar to NTH23 protein. (Os02t0182800-01)

Coordinates

chr2:+:4625425..4628750

Molecular Weight (calculated)

33877.8 Da

IEP (calculated)

6.006

GRAVY (calculated)

-0.592

Length

313 amino acids

Sequence
(BLAST)

001: MAFHYPDHGL AMDPSSAAAS SPNPSFSPGG GGGGGVGGGE REKAAVAAHP LYERLLEAHV ACLRVATPVD QLPRIDAQIA ARPPPLAAAS AAAAAGGPSG
101: GEELDLFMTH YVLLLCSFKE QLQQHVRVHA MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS EANMFDGNDG SDGMGFGPLM LTEGERSLVE
201: RVRHELKNEL KQGYKEKLVD IREEILRKRR AGKLPGDTAS ILKAWWQAHS KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP ASSGEKTKKK
301: RNVTGDGGAE QSW

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.