Factsheet for Os03t0673500-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0831800-00
Os01t0848400-01
Os01t0864000-01
Os02t0182800-01
Os02t0317400-01
Os02t0661600-00
Os02t0679700-01
Os03t0123500-02
Os03t0124000-01
Os03t0126450-00
Os03t0680800-02
Os04t0101800-01
Os04t0577700-01
Os04t0668800-01
Os05t0105800-01
Os05t0440900-00
Os05t0455200-01
Os06t0108900-02
Os06t0646600-01
Os09t0251450-00
Os10t0532600-01
Os10t0534900-01
Os10t0554001-01
Os11t0497000-01
Os12t0636200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	Os05t0105800-01	AT1G22630.1	21798944
AT4G08150.1	Os03t0123500-02	AT1G62990.1	15781858
AT4G08150.1	Os03t0680800-02	AT2G16400.1	15781858
AT4G08150.1	Os12t0636200-01	AT2G16400.1	15781858
AT4G08150.1	Os04t0101800-01	AT2G22680.1	21798944
AT4G08150.1	Os01t0831800-00	AT3G52525.1	15781858
AT4G08150.1	Os01t0864000-01	AT3G52525.1	15781858
AT4G08150.1	Os02t0679700-01	AT3G52525.1	15781858
AT4G08150.1	Os03t0126450-00	AT3G52525.1	15781858
AT4G08150.1	Os04t0577700-01	AT3G52525.1	15781858
AT4G08150.1	Os05t0440900-00	AT3G52525.1	15781858
AT4G08150.1	Os10t0532600-01	AT3G52525.1	15781858
AT4G08150.1	Os02t0317400-01	AT4G08520.1	21798944
AT4G08150.1	Os09t0251450-00	AT4G08520.1	21798944
AT4G08150.1	Os02t0661600-00	AT4G12450.1	21798944
AT4G08150.1	Os10t0554001-01	AT4G12450.1	21798944
AT4G08150.1	Os01t0848400-01	AT5G02030.1	12897247
AT4G08150.1	Os05t0455200-01	AT5G02030.1	12897247
AT4G08150.1	Os01t0848400-01	AT5G02030.1	15019989
AT4G08150.1	Os05t0455200-01	AT5G02030.1	15019989
AT4G08150.1	Os01t0848400-01	AT5G02030.1	15781858
AT4G08150.1	Os05t0455200-01	AT5G02030.1	15781858
AT4G08150.1	Os02t0182800-01	AT5G11060.1	15781858
AT4G08150.1	Os06t0646600-01	AT5G11060.1	15781858
AT4G08150.1	Os03t0124000-01	AT5G41410.1	11701881
AT4G08150.1	Os06t0108900-02	AT5G41410.1	11701881
AT4G08150.1	Os10t0534900-01	AT5G41410.1	11701881
AT4G08150.1	Os03t0124000-01	AT5G41410.1	15781858
AT4G08150.1	Os06t0108900-02	AT5G41410.1	15781858
AT4G08150.1	Os10t0534900-01	AT5G41410.1	15781858
AT4G08150.1	Os03t0124000-01	AT5G41410.1	17873098
AT4G08150.1	Os06t0108900-02	AT5G41410.1	17873098
AT4G08150.1	Os10t0534900-01	AT5G41410.1	17873098
AT4G08150.1	Os04t0668800-01	AT5G50100.1	21798944
AT4G08150.1	Os11t0497000-01	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0673000-00	Rice	nucleus	17.15	76.62
TraesCS4B01G022000.1	Wheat	nucleus	44.77	51.33
TraesCS4A01G292000.1	Wheat	cytosol, nucleus, plastid	22.09	50.0
TraesCS4D01G019800.1	Wheat	nucleus	45.35	48.45
CDY34012	Canola	nucleus	27.03	48.19
TraesCS4A01G251800.1	Wheat	nucleus	22.97	47.59
TraesCS4D01G019900.1	Wheat	nucleus	45.06	47.55
TraesCS4A01G292100.1	Wheat	nucleus	44.19	46.06
TraesCS4A01G291900.1	Wheat	nucleus	43.9	45.9
HORVU4Hr1G003410.3	Barley	nucleus	45.64	44.48
GSMUA_Achr10P...	Banana	nucleus	29.36	38.85
Os03t0771500-01	Rice	nucleus	37.79	38.69
Os07t0129700-01	Rice	nucleus	39.83	38.59
Solyc04g077210.2.1	Tomato	nucleus	38.95	37.75
PGSC0003DMT400012712	Potato	nucleus	38.66	36.94
Os03t0727000-02	Rice	nucleus	38.37	36.57
VIT_18s0001g08380.t01	Wine grape	nucleus	39.24	36.49
KRH61471	Soybean	nucleus	37.5	35.73
Os05t0129700-01	Rice	nucleus	31.98	35.37
KRH15482	Soybean	nucleus	39.24	35.06
KRG88661	Soybean	nucleus	38.95	34.63
Os01t0302500-01	Rice	nucleus	30.23	34.55
Bra000638.1-P	Field mustard	nucleus	37.5	33.33
AT4G08150.1	Thale cress	nucleus	38.37	33.17
Os03t0727200-00	Rice	nucleus	34.3	32.33
CDX83145	Canola	nucleus	37.5	32.09
Os08t0292900-01	Rice	nucleus, plasma membrane	17.15	27.96
CDY68624	Canola	nucleus	27.33	26.93
Os02t0182800-01	Rice	nucleus	22.38	24.6
Os06t0646600-01	Rice	nucleus	22.38	23.84
Os03t0772100-00	Rice	vacuole	27.91	23.08
Os03t0123500-02	Rice	nucleus	20.93	22.93

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	UniProt:A0A0P0W174	ProteinID:BAS85702.1	InterPro:ELK_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EnsemblPlantsGene:Os03g0673500	EnsemblPlants:Os03t0673500-00
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF106	SMART:SM00389	SMART:SM01188	SMART:SM01255
SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000393AC73	SEG:seg	:	:

Description

Similar to Homeobox protein knotted-1-like 4. (Os03t0673500-00)

Coordinates

chr3:-:26605077..26610235

Molecular Weight (calculated)

37752.4 Da

IEP (calculated)

7.391

GRAVY (calculated)

-0.553

Length

344 amino acids

Sequence
(BLAST)

001: MEQLHLLLAS GGGSKASTTI TPFCLARDHA STSSPSPAAV AAPAPPPEAT SGSEQSIHGS GTGLQSSEAM IKAKIMSHPL YPSLLRAFVD CKKVGAPPEV
101: VGRLSSLAVV TDVPQYSGDR CLPAQQPAAD PELDQFMETY CYMLTRYGQE LARPIQEAEE FFRGIEEQID SLALGAYTRT IYEDVSYDYE DEVAGGLPEK
201: SAAFGENEVT TTTRRHLMNK YSGYLNSLWT EISNKKKNST GHLPRDARHK LLQWWHLHYR WPYPSEAEKA ALAESTGLDK KQVTNWFINQ RKRHWKPKPA
301: AAMDAGFLQM HPRYGASSSS SPAAALRVED GGGRRSAYHP RGGP

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.