Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0758000-01 | |
| Os06t0219500-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08520.1 | Os02t0758000-01 | AT4G25200.1 | 21798944 |
| AT4G08520.1 | Os06t0219500-00 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG35813 | Sorghum | cytosol | 93.96 | 93.96 |
| TraesCS5D01G173000.1 | Wheat | cytosol | 93.41 | 93.41 |
| TraesCS5B01G165500.2 | Wheat | cytosol | 93.41 | 93.41 |
| Zm00001d020783_P005 | Maize | mitochondrion | 92.31 | 82.76 |
| Solyc02g071170.2.1 | Tomato | plastid | 76.92 | 79.1 |
| PGSC0003DMT400007924 | Potato | cytosol | 75.82 | 77.97 |
| KRH36712 | Soybean | endoplasmic reticulum | 75.82 | 77.09 |
| KRH11718 | Soybean | endoplasmic reticulum | 75.27 | 76.54 |
| TraesCS5A01G168700.2 | Wheat | cytosol | 93.96 | 76.0 |
| Solyc12g044910.1.1 | Tomato | cytosol | 74.18 | 73.77 |
| PGSC0003DMT400083870 | Potato | cytosol | 74.18 | 73.77 |
| VIT_09s0002g01710.t01 | Wine grape | cytosol | 73.08 | 72.68 |
| Solyc03g121800.2.1 | Tomato | plastid | 73.08 | 72.28 |
| PGSC0003DMT400006628 | Potato | cytosol | 73.08 | 72.28 |
| CDY36196 | Canola | cytosol | 71.43 | 71.82 |
| CDX75151 | Canola | cytosol | 70.88 | 71.27 |
| AT4G08520.1 | Thale cress | cytosol | 70.88 | 71.27 |
| CDY44731 | Canola | cytosol | 70.33 | 70.72 |
| CDY41585 | Canola | cytosol | 70.33 | 70.72 |
| AT1G60970.1 | Thale cress | cytosol | 68.68 | 70.62 |
| KRH44115 | Soybean | cytosol | 69.78 | 70.56 |
| KRH23291 | Soybean | endoplasmic reticulum | 69.78 | 70.17 |
| Os05t0461000-01 | Rice | cytosol | 67.58 | 69.49 |
| VIT_10s0003g02760.t01 | Wine grape | cytosol | 75.82 | 69.0 |
| Os01t0838800-02 | Rice | cytosol | 67.03 | 68.93 |
| CDY41313 | Canola | cytosol | 69.23 | 68.48 |
| CDY22204 | Canola | cytosol | 69.23 | 68.48 |
| Bra027107.1-P | Field mustard | cytosol | 66.48 | 68.36 |
| Bra029790.1-P | Field mustard | cytosol | 54.95 | 68.03 |
| Bra001298.1-P | Field mustard | cytosol | 68.68 | 67.93 |
| CDX73995 | Canola | cytosol | 68.68 | 67.93 |
| Bra037861.1-P | Field mustard | extracellular | 48.9 | 64.49 |
| KRH47095 | Soybean | endoplasmic reticulum | 63.19 | 61.17 |
| Os09t0251450-00 | Rice | extracellular | 23.63 | 52.44 |
| CDY07940 | Canola | cytosol | 68.68 | 52.3 |
| CDY12879 | Canola | mitochondrion | 66.48 | 50.84 |
| CDY44831 | Canola | cytosol, mitochondrion | 64.29 | 50.0 |
| AT3G09800.6 | Thale cress | cytosol | 70.33 | 49.42 |
Protein Annotations
| MapMan:22.3.1.4.4 | Gene3D:3.30.450.60 | EntrezGene:4329152 | EMBL:AB040041 | EMBL:AK061254 | InterPro:AP_mu_sigma_su |
| ProteinID:BAD15717.1 | ProteinID:BAD27645.1 | ProteinID:BAF08586.1 | ProteinID:BAS78350.1 | ProteinID:EEE56841.1 | GO:GO:0000139 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030663 | GO:GO:0031410 |
| InterPro:Longin-like_dom_sf | EnsemblPlantsGene:Os02g0317400 | EnsemblPlants:Os02t0317400-01 | PFAM:PF01217 | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF8 |
| UniProt:Q6Z844 | SUPFAM:SSF64356 | UniParc:UPI0000358B46 | RefSeq:XP_015623148.1 | RefSeq:XP_015623149.1 | : |
Description
COPZ2Longin-like domain containing protein. (Os02t0317400-01);Similar to Coatomer subunit zeta-2. (Os02t0317400-02)
Coordinates
chr2:+:12609112..12613259
Molecular Weight (calculated)
19868.6 Da
IEP (calculated)
4.412
GRAVY (calculated)
0.048
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEFSKESCP SVKNILLLDS EGKRVAVKYF SDDWSSNASK LAFEKSVFTK TLKTNARSEA EITLFDGYIV VYKFVQDLHF FVTAGDDENE LIIANVLQGF
101: SDSVGLLLRG DVEKRTALEN LDLILLCIDE IVDGGIILET DANTIAGKVA TNAVDGSAPF SEQTISQALA TAREHLARSL LK
101: SDSVGLLLRG DVEKRTALEN LDLILLCIDE IVDGGIILET DANTIAGKVA TNAVDGSAPF SEQTISQALA TAREHLARSL LK
001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
Arabidopsis Description
Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.