Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027107.1-P | Field mustard | cytosol | 91.53 | 91.53 |
| Solyc02g071170.2.1 | Tomato | plastid | 76.84 | 76.84 |
| PGSC0003DMT400007924 | Potato | cytosol | 76.27 | 76.27 |
| KRH11718 | Soybean | endoplasmic reticulum | 75.14 | 74.3 |
| KRH36712 | Soybean | endoplasmic reticulum | 75.14 | 74.3 |
| VIT_10s0003g02760.t01 | Wine grape | cytosol | 81.36 | 72.0 |
| AT4G08520.1 | Thale cress | cytosol | 72.32 | 70.72 |
| KXG35813 | Sorghum | cytosol | 71.19 | 69.23 |
| Os02t0317400-01 | Rice | cytosol | 70.62 | 68.68 |
| TraesCS5B01G165500.2 | Wheat | cytosol | 70.06 | 68.13 |
| CDY12879 | Canola | mitochondrion | 91.53 | 68.07 |
| CDY44831 | Canola | cytosol, mitochondrion | 89.83 | 67.95 |
| TraesCS5D01G173000.1 | Wheat | cytosol | 69.49 | 67.58 |
| Zm00001d020783_P005 | Maize | mitochondrion | 71.75 | 62.56 |
| TraesCS5A01G168700.2 | Wheat | cytosol | 70.06 | 55.11 |
| AT3G09800.6 | Thale cress | cytosol | 72.88 | 49.81 |
| Os09t0251450-00 | Rice | extracellular | 20.34 | 43.9 |
Protein Annotations
| MapMan:22.3.1.4.4 | Gene3D:3.30.450.60 | EntrezGene:842388 | ProteinID:AAG51650.1 | ProteinID:AEE33754.1 | InterPro:AP_mu_sigma_su |
| ArrayExpress:AT1G60970 | EnsemblPlantsGene:AT1G60970 | RefSeq:AT1G60970 | TAIR:AT1G60970 | RefSeq:AT1G60970-TAIR-G | EnsemblPlants:AT1G60970.1 |
| TAIR:AT1G60970.1 | EMBL:AY053405 | EMBL:AY133515 | Unigene:At.17786 | GO:GO:0000139 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030663 | GO:GO:0031410 | InterPro:Longin-like_dom_sf |
| RefSeq:NP_564767.1 | PFAM:PF01217 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009052 |
| PO:PO:0025022 | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF8 | UniProt:Q940S5 | SUPFAM:SSF64356 | UniParc:UPI000009D403 |
Description
Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
Coordinates
chr1:-:22447811..22449536
Molecular Weight (calculated)
19616.3 Da
IEP (calculated)
4.310
GRAVY (calculated)
-0.129
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.