Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44731 | Canola | cytosol | 65.25 | 93.37 |
| CDY41585 | Canola | cytosol | 65.25 | 93.37 |
| Bra029790.1-P | Field mustard | cytosol | 52.9 | 93.2 |
| Bra001298.1-P | Field mustard | cytosol | 66.02 | 92.93 |
| CDX73995 | Canola | cytosol | 66.02 | 92.93 |
| CDY22204 | Canola | cytosol | 64.86 | 91.3 |
| CDY41313 | Canola | cytosol | 64.86 | 91.3 |
| AT4G08520.1 | Thale cress | cytosol | 63.32 | 90.61 |
| KRH44115 | Soybean | cytosol | 52.51 | 75.56 |
| KRH23291 | Soybean | endoplasmic reticulum | 50.97 | 72.93 |
| AT1G60970.1 | Thale cress | cytosol | 49.81 | 72.88 |
| PGSC0003DMT400006628 | Potato | cytosol | 51.74 | 72.83 |
| CDY07940 | Canola | cytosol | 67.18 | 72.8 |
| VIT_09s0002g01710.t01 | Wine grape | cytosol | 51.35 | 72.68 |
| Solyc03g121800.2.1 | Tomato | plastid | 51.35 | 72.28 |
| PGSC0003DMT400083870 | Potato | cytosol | 50.97 | 72.13 |
| Solyc12g044910.1.1 | Tomato | cytosol | 50.97 | 72.13 |
| KXG35813 | Sorghum | cytosol | 49.81 | 70.88 |
| Os02t0317400-01 | Rice | cytosol | 49.42 | 70.33 |
| TraesCS5D01G173000.1 | Wheat | cytosol | 49.03 | 69.78 |
| TraesCS5B01G165500.2 | Wheat | cytosol | 48.65 | 69.23 |
| KRH47095 | Soybean | endoplasmic reticulum | 47.1 | 64.89 |
| Zm00001d020783_P005 | Maize | mitochondrion | 50.58 | 64.53 |
| TraesCS5A01G168700.2 | Wheat | cytosol | 48.65 | 56.0 |
| Os09t0251450-00 | Rice | extracellular | 13.51 | 42.68 |
Protein Annotations
| MapMan:22.3.1.4.4 | Gene3D:3.30.450.60 | EntrezGene:820138 | UniProt:A0A1I9LRF9 | ProteinID:ANM65167.1 | InterPro:AP_mu_sigma_su |
| ArrayExpress:AT3G09800 | EnsemblPlantsGene:AT3G09800 | RefSeq:AT3G09800 | TAIR:AT3G09800 | RefSeq:AT3G09800-TAIR-G | EnsemblPlants:AT3G09800.6 |
| Unigene:At.40039 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | InterPro:Longin-like_dom_sf | RefSeq:NP_001327157.1 | PFAM:PF01217 | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF8 |
| SUPFAM:SSF64356 | UniParc:UPI00084898EA | : | : | : | : |
Description
SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
Coordinates
chr3:-:3006513..3008610
Molecular Weight (calculated)
28867.4 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.115
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLNGHGQMN RISINYKNRS DEIKHSDPDK QCDTETAKGA LSHSEAISSV STILRFSHLN PPIHYFFSDL LFRYISSLTT MSPDSCPLVK KILLLDSEGK
101: RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA VALLLRSNVE KMEALENLDL
201: IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
101: RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA VALLLRSNVE KMEALENLDL
201: IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.