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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 3
  • plasma membrane 1
  • nucleus 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 endoplasmic reticulum: 27224218
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH07754
KRH11116
KRH11117
KRH21130
KRH23958
KRH26204
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G08520.1 KRH23958 AT4G25200.1 21798944
AT4G08520.1 KRH39841 AT4G25200.1 21798944
AT4G08520.1 KRH07754 AT4G32520.1 21798944
AT4G08520.1 KRH11116 AT4G32520.1 21798944
AT4G08520.1 KRH11117 AT4G32520.1 21798944
AT4G08520.1 KRH21130 AT4G32520.1 21798944
AT4G08520.1 KRH26204 AT4G32520.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44115 Soybean cytosol 86.17 90.0
KRH23291 Soybean endoplasmic reticulum 77.66 80.66
VIT_09s0002g01710.t01 Wine grape cytosol 69.68 71.58
Solyc03g121800.2.1 Tomato plastid 69.15 70.65
PGSC0003DMT400006628 Potato cytosol 68.09 69.57
Solyc12g044910.1.1 Tomato cytosol 66.49 68.31
PGSC0003DMT400083870 Potato cytosol 66.49 68.31
CDX75151 Canola cytosol 65.43 67.96
CDY36196 Canola cytosol 65.43 67.96
KRH11718 Soybean endoplasmic reticulum 63.83 67.04
KRH36712 Soybean endoplasmic reticulum 63.3 66.48
AT4G08520.1 Thale cress cytosol 63.3 65.75
CDY41585 Canola cytosol 62.77 65.19
CDY44731 Canola cytosol 62.77 65.19
CDX73995 Canola cytosol 62.77 64.13
Bra001298.1-P Field mustard cytosol 62.77 64.13
CDY22204 Canola cytosol 62.23 63.59
CDY41313 Canola cytosol 62.23 63.59
KXG35813 Sorghum cytosol 61.17 63.19
Os02t0317400-01 Rice cytosol 61.17 63.19
TraesCS5D01G173000.1 Wheat cytosol 60.64 62.64
TraesCS5B01G165500.2 Wheat cytosol 60.11 62.09
Bra029790.1-P Field mustard cytosol 47.87 61.22
Bra037861.1-P Field mustard extracellular 43.09 58.7
Zm00001d020783_P005 Maize mitochondrion 62.23 57.64
TraesCS5A01G168700.2 Wheat cytosol 60.11 50.22
CDY07940 Canola cytosol 62.23 48.95
AT3G09800.6 Thale cress cytosol 64.89 47.1
Os09t0251450-00 Rice extracellular 18.09 41.46
Protein Annotations
EntrezGene:100775726MapMan:22.3.1.4.4Gene3D:3.30.450.60EntrezGene:547466EMBL:ACUP02004135InterPro:AP_mu_sigma_su
EnsemblPlantsGene:GLYMA_07G008000GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015031GO:GO:0016020
GO:GO:0016192UniProt:I1KG99EnsemblPlants:KRH47095ProteinID:KRH47095ProteinID:KRH47095.1InterPro:Longin-like_dom_sf
PFAM:PF01217PANTHER:PTHR11043PANTHER:PTHR11043:SF8SUPFAM:SSF64356UniParc:UPI00023C7CF6SEG:seg
Description
hypothetical protein
Coordinates
chr7:-:585806..588901
Molecular Weight (calculated)
20970.2 Da
IEP (calculated)
4.176
GRAVY (calculated)
0.144
Length
188 amino acids
Sequence
(BLAST)
001: MASQGLCPSI KNILLLDSEG KRVAVKYYSD DWPTNNAKLA FEKFVFTKTV KTNARTEAEV TLLENNIIIY KFVQDLHFFV TGGEDENELI LASVLQGFFD
101: AVTLLLRSNV DKREALENLD LILLCLDEIV DGGMILETNG PLIAEKVTSH SLDADAPLSE QVMQLCFDLV CVWEAIEPNA TYFMKATA
Best Arabidopsis Sequence Match ( AT1G60970.1 )
(BLAST)
001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK
Arabidopsis Description
Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.