Factsheet for Solyc03g121800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g065490.2.1
Solyc08g078700.2.1
Solyc12g095930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT4G08520.1	Solyc08g065490.2.1	AT4G32520.1	21798944
AT4G08520.1	Solyc12g095930.1.1	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006628	Potato	cytosol	98.37	98.37
Solyc12g044910.1.1	Tomato	cytosol	86.96	87.43
VIT_09s0002g01710.t01	Wine grape	cytosol	79.89	80.33
KRH44115	Soybean	cytosol	78.26	80.0
KRH23291	Soybean	endoplasmic reticulum	77.17	78.45
Solyc02g071170.2.1	Tomato	plastid	75.0	77.97
CDY36196	Canola	cytosol	74.46	75.69
CDX75151	Canola	cytosol	73.91	75.14
CDY44731	Canola	cytosol	73.91	75.14
CDY41585	Canola	cytosol	73.91	75.14
AT4G08520.1	Thale cress	cytosol	73.37	74.59
CDX73995	Canola	cytosol	74.46	74.46
Bra001298.1-P	Field mustard	cytosol	74.46	74.46
CDY41313	Canola	cytosol	73.91	73.91
CDY22204	Canola	cytosol	73.91	73.91
Os02t0317400-01	Rice	cytosol	72.28	73.08
KXG35813	Sorghum	cytosol	71.74	72.53
Bra029790.1-P	Field mustard	cytosol	57.07	71.43
TraesCS5D01G173000.1	Wheat	cytosol	70.65	71.43
TraesCS5B01G165500.2	Wheat	cytosol	70.11	70.88
KRH47095	Soybean	endoplasmic reticulum	70.65	69.15
Bra037861.1-P	Field mustard	extracellular	50.54	67.39
Zm00001d020783_P005	Maize	mitochondrion	72.28	65.52
TraesCS5A01G168700.2	Wheat	cytosol	70.11	57.33
CDY07940	Canola	cytosol	73.91	56.9
AT3G09800.6	Thale cress	cytosol	72.28	51.35
Os09t0251450-00	Rice	extracellular	18.48	41.46

Protein Annotations

EMBL:AB040042	EnsemblPlants:Solyc03g121800.2.1	EnsemblPlantsGene:Solyc03g121800.2	Gene3D:3.30.450.60	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf
PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	PFAM:PF01217	SEG:seg	SUPFAM:SSF64356	UniParc:UPI00000A6D54
UniProt:Q9MAZ7	MapMan:22.3.1.4.4	:	:	:	:

Description

Nonclathrin coat protein zeta1-COP [Source:UniProtKB/TrEMBL;Acc:Q9MAZ7]

Coordinates

chr3:+:69847290..69850707

Molecular Weight (calculated)

20536.4 Da

IEP (calculated)

4.331

GRAVY (calculated)

-0.103

Length

184 amino acids

Sequence
(BLAST)

001: MAGFLLNYDS CPVVKNILLL DSEGKRVAVK YYSDDWPTNN AKVAFEKSIF TKTQKTNART EAEITMFENN IIVYKFVQDL HFFVTGGDDE NELVLATVLQ
101: GFYDAVTLLL RNNVDQREAL ENLDLILLCL DEIVDGGMVL ETDGNTIAGK VSSHNMDDGA PLSEQTITQA LATAREHLTR SLLR

Best Arabidopsis Sequence Match ( AT1G60970.1 )
(BLAST)

001: MELPPKVKNI LLLDSEGKRV AVKYYSDDWP TNSAQEAFEK SVFTKTQKTN ARTEVEVTAL ENNIVVYKFV QDLHFFVTGG EEENELILAS VLEGLFDAVT
101: LLLRSNVDKR EALDNLDLIF LSFDEIIDGG IVLETDANVI AGKAGINSTD PNAPLSEQTI SQALATAREH LTRSLMK

Arabidopsis Description

Coatomer subunit zeta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q940S5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.