Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75151 | Canola | cytosol | 93.37 | 93.37 |
| CDY36196 | Canola | cytosol | 92.82 | 92.82 |
| Bra037861.1-P | Field mustard | extracellular | 66.3 | 86.96 |
| VIT_09s0002g01710.t01 | Wine grape | cytosol | 75.69 | 74.86 |
| PGSC0003DMT400006628 | Potato | cytosol | 75.14 | 73.91 |
| KRH44115 | Soybean | cytosol | 73.48 | 73.89 |
| Solyc03g121800.2.1 | Tomato | plastid | 74.59 | 73.37 |
| KRH23291 | Soybean | endoplasmic reticulum | 72.38 | 72.38 |
| AT1G60970.1 | Thale cress | cytosol | 70.72 | 72.32 |
| Solyc12g044910.1.1 | Tomato | cytosol | 71.82 | 71.04 |
| PGSC0003DMT400083870 | Potato | cytosol | 71.82 | 71.04 |
| KXG35813 | Sorghum | cytosol | 71.27 | 70.88 |
| Os02t0317400-01 | Rice | cytosol | 71.27 | 70.88 |
| TraesCS5B01G165500.2 | Wheat | cytosol | 69.61 | 69.23 |
| TraesCS5D01G173000.1 | Wheat | cytosol | 69.06 | 68.68 |
| Zm00001d020783_P005 | Maize | mitochondrion | 71.82 | 64.04 |
| AT3G09800.6 | Thale cress | cytosol | 90.61 | 63.32 |
| KRH47095 | Soybean | endoplasmic reticulum | 65.75 | 63.3 |
| TraesCS5A01G168700.2 | Wheat | cytosol | 69.61 | 56.0 |
| Os09t0251450-00 | Rice | extracellular | 18.78 | 41.46 |
Protein Annotations
| MapMan:22.3.1.4.4 | Gene3D:3.30.450.60 | EntrezGene:826411 | UniProt:A0A178V304 | ProteinID:AAC28193.1 | ProteinID:AEE82653.1 |
| EMBL:AK227943 | InterPro:AP_mu_sigma_su | ArrayExpress:AT4G08520 | EnsemblPlantsGene:AT4G08520 | RefSeq:AT4G08520 | TAIR:AT4G08520 |
| RefSeq:AT4G08520-TAIR-G | EnsemblPlants:AT4G08520.1 | TAIR:AT4G08520.1 | EMBL:AY074506 | EMBL:AY085280 | EMBL:AY150422 |
| ProteinID:CAB77977.1 | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030663 | GO:GO:0031410 | InterPro:Longin-like_dom_sf | RefSeq:NP_567337.1 | ProteinID:OAO99281.1 |
| PFAM:PF01217 | PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF8 | UniProt:Q8H1F4 |
| SUPFAM:SSF64356 | UniParc:UPI00000ADA8B | : | : | : | : |
Description
Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
Coordinates
chr4:+:5417209..5420639
Molecular Weight (calculated)
19877.7 Da
IEP (calculated)
4.314
GRAVY (calculated)
0.046
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.