Factsheet for VIT_09s0002g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00770.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08520.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT4G08520.1	VIT_04s0008g00770.t01	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44115	Soybean	cytosol	80.33	81.67
Solyc12g044910.1.1	Tomato	cytosol	81.42	81.42
PGSC0003DMT400083870	Potato	cytosol	81.42	81.42
Solyc03g121800.2.1	Tomato	plastid	80.33	79.89
PGSC0003DMT400006628	Potato	cytosol	79.78	79.35
KRH23291	Soybean	endoplasmic reticulum	77.05	77.9
CDX75151	Canola	cytosol	75.96	76.8
CDY36196	Canola	cytosol	75.96	76.8
AT4G08520.1	Thale cress	cytosol	74.86	75.69
CDY41585	Canola	cytosol	74.32	75.14
CDY44731	Canola	cytosol	74.32	75.14
VIT_10s0003g02760.t01	Wine grape	cytosol	81.97	75.0
Os02t0317400-01	Rice	cytosol	72.68	73.08
CDY22204	Canola	cytosol	73.22	72.83
CDX73995	Canola	cytosol	73.22	72.83
Bra001298.1-P	Field mustard	cytosol	73.22	72.83
KXG35813	Sorghum	cytosol	72.13	72.53
CDY41313	Canola	cytosol	72.13	71.74
Bra029790.1-P	Field mustard	cytosol	57.38	71.43
KRH47095	Soybean	endoplasmic reticulum	71.58	69.68
Bra037861.1-P	Field mustard	extracellular	52.46	69.57
TraesCS5B01G165500.2	Wheat	cytosol	68.85	69.23
TraesCS5D01G173000.1	Wheat	cytosol	68.31	68.68
Zm00001d020783_P005	Maize	mitochondrion	72.68	65.52
TraesCS5A01G168700.2	Wheat	cytosol	68.85	56.0
CDY07940	Canola	cytosol	72.68	55.65
AT3G09800.6	Thale cress	cytosol	72.68	51.35
Os09t0251450-00	Rice	extracellular	20.77	46.34

Protein Annotations

EntrezGene:100260064	wikigene:100260064	MapMan:22.3.1.4.4	Gene3D:3.30.450.60	InterPro:AP_mu_sigma_su	ProteinID:CBI35910
ProteinID:CBI35910.3	UniProt:D7TZW4	EMBL:FN596494	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EntrezGene:LOC100260064	wikigene:LOC100260064	InterPro:Longin-like_dom_sf
PFAM:PF01217	PANTHER:PTHR11043	PANTHER:PTHR11043:SF8	SUPFAM:SSF64356	TIGR:TC54497	TIGR:TC61684
UniParc:UPI00015C8871	ArrayExpress:VIT_09s0002g01710	EnsemblPlantsGene:VIT_09s0002g01710	EnsemblPlants:VIT_09s0002g01710.t01	unigene:Vvi.4636	RefSeq:XP_002277175
RefSeq:XP_002277175.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:1537574..1542889

Molecular Weight (calculated)

20100.0 Da

IEP (calculated)

4.559

GRAVY (calculated)

0.013

Length

183 amino acids

Sequence
(BLAST)

001: MANFSTHGAC PSIKNILLLD SEGKRVAVKY YSDDWPTNAA KLAFEKSVFT KTQKTNARTE AEIAMFENNV VIYKFIQDLH FFVTGGDDEN ELILATVLQG
101: FSDAVALLLR NNIDKREALE NLDLILLCLD EIVDGGMILE TDASVIEGKV AAHSIDAGAP LSEQTLTQAL ATAREHLTRS LLK

Best Arabidopsis Sequence Match ( AT4G08520.1 )
(BLAST)

001: MAGTNDSCPL VKNILLLDSE GKRVAVKYYS DDWATNASKL AFEKYVFSKT SKTNARTEAE ITLLESNIVV YKFAQDLHFF VTGGENENEL VLSSVLQGFF
101: DAVALLLRNN VEKMEALENL DLIFLCLDEM VDQGMVLETD ANVIAGKVAM QSAEASGSLS EQTLTQALAT AREHLARSLL T

Arabidopsis Description

Coatomer subunit zeta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.