Factsheet for VIT_04s0008g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00770.t01
VIT_09s0002g06040.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	VIT_09s0002g06040.t01	AT3G15660.1	21798944
AT4G32520.1	VIT_04s0008g00770.t01	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	62.12	86.32
Solyc12g095930.1.1	Tomato	plastid	83.9	84.06
PGSC0003DMT400075571	Potato	plastid	83.33	83.65
Solyc08g065490.2.1	Tomato	nucleus, plastid	82.01	82.63
PGSC0003DMT400005611	Potato	cytosol, plastid	81.82	82.44
KRH11116	Soybean	cytosol	37.12	80.33
AT4G32520.1	Thale cress	plastid	78.79	78.64
KRH21130	Soybean	plastid	79.17	77.99
Bra040080.1-P	Field mustard	plastid	78.03	77.88
KRH26204	Soybean	cytosol	28.03	74.37
KRH07754	Soybean	cytosol, nucleus, peroxisome	30.3	74.07
KRH11117	Soybean	plastid	31.44	73.13
CDY39889	Canola	plastid	78.03	71.03
CDY23328	Canola	golgi, plasma membrane	77.27	65.81
VIT_05s0029g00310.t01	Wine grape	cytosol	51.33	57.54
VIT_00s0211g00100.t01	Wine grape	mitochondrion	26.89	57.26
VIT_18s0001g07960.t01	Wine grape	mitochondrion	54.73	56.01
VIT_00s0211g00120.t01	Wine grape	mitochondrion	54.73	55.79
VIT_00s0211g00070.t01	Wine grape	mitochondrion	53.22	54.25
VIT_00s0211g00160.t01	Wine grape	mitochondrion	23.86	53.39
VIT_00s0211g00090.t01	Wine grape	cytosol	25.38	51.54
VIT_00s0211g00080.t01	Wine grape	cytosol	16.1	46.7
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	48.86	44.18
VIT_12s0034g02380.t01	Wine grape	cytosol	48.11	44.02

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100250728	wikigene:100250728	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ProteinID:CBI20619	ProteinID:CBI20619.3
UniProt:D7STM0	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
EntrezGene:LOC100250728	wikigene:LOC100250728	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	TIGR:TC56974	TIGR:TC66681	UniParc:UPI0001982E77	ArrayExpress:VIT_04s0008g00770
EnsemblPlantsGene:VIT_04s0008g00770	EnsemblPlants:VIT_04s0008g00770.t01	unigene:Vvi.23584	unigene:Vvi.28	RefSeq:XP_002277146	RefSeq:XP_002277146.1

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:D7STM0]

Coordinates

chr4:+:676927..680927

Molecular Weight (calculated)

57143.8 Da

IEP (calculated)

8.030

GRAVY (calculated)

-0.132

Length

528 amino acids

Sequence
(BLAST)

001: MQACSGTAAM GSLQQPIWIK GSSFAPNGST VNGFPHQIKL NSVKPCRSYI KGSLVTGKPP SSVSVTVPGN GDSGVNFIDH GLNEADPEVC AIIYKEKQRQ
101: MKSLELIASE NFTSRAVMEA VGSCLTNKYS EGLPGKRYYG GNEFIDELET LCQKRALAAF HLDGKKWGVN VQPLSGSPAN FEVYTALLNP HDRIMGLDLP
201: HGGHLSHGFM TPKRRVSGTS IYFESMPYRL DESTGLVDYD MLEKTANLFR PKLIIAGASA YPRDFDYPRM RKIADGVGAF LMMDMAHISG LVAASVVADP
301: FEYCDIVTTT THKSLRGPRG GMIFFKKDSV LGVDLESAIN NAVFPGLQGG PHNHTIGGLS VCLKHAQSPE FKAYQNQVVS NCRALAGRLI ELGYNLVSGG
401: SDNHLILVDL RPLGIDGARA EKILDMASIT LNKNSVPGDK SALVPGGIRI GSPAMTTRGF SEKEFIATAD FIHEGVQLSL EAKKSVSGSK LLDFMKFVTS
501: PDFSLIDRVS DLQRRVETLT TQFPMPGL

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.