Skip to main content
crop-pal logo
Wine grape
Search for another protein from :
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 3
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_00s0211g00090.t01 Wine grape cytosol 50.0 35.0
VIT_00s0211g00120.t01 Wine grape mitochondrion 65.38 22.97
VIT_00s0211g00070.t01 Wine grape mitochondrion 63.74 22.39
VIT_18s0001g07960.t01 Wine grape mitochondrion 61.54 21.71
VIT_05s0029g00310.t01 Wine grape cytosol 50.0 19.32
KRH18830 Soybean cytosol, peroxisome, plastid 12.64 17.83
VIT_04s0008g00770.t01 Wine grape plastid 46.7 16.1
VIT_12s0034g02380.t01 Wine grape cytosol 48.35 15.25
VIT_18s0001g04340.t01 Wine grape cytosol, nucleus, plastid 46.15 14.38
VIT_00s0211g00100.t01 Wine grape mitochondrion 7.69 5.65
VIT_00s0211g00160.t01 Wine grape mitochondrion 4.95 3.81
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1Gene3D:3.40.640.10
MapMan:35.1ProteinID:CCB50023ProteinID:CCB50023.1UniProt:F6HCS8EMBL:FN595522GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0030170InterPro:IPR015421PFAM:PF00464ScanProsite:PS00096
PANTHER:PTHR11680PANTHER:PTHR11680:SF29InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI0002109889ArrayExpress:VIT_00s0211g00080EnsemblPlantsGene:VIT_00s0211g00080EnsemblPlants:VIT_00s0211g00080.t01SEG:seg:
Description
No Description!
Coordinates
chrUn:-:12898391..12902937
Molecular Weight (calculated)
19626.9 Da
IEP (calculated)
7.671
GRAVY (calculated)
-0.013
Length
182 amino acids
Sequence
(BLAST)
001: MATVPQSTPE VNPLLLDFDF PPFDAVKADH VIPGIRTMLN QLVCDKQKAI LLADMAHISG LVAAGVIPSP FEYADIVTTT THKSLRGPRG AMIFFRKGVK
101: EVNKQGKEVL YDYEDKINQA VFPGLQGGPH NHTIAGLAVA LKQVSMFGSC NPGTNTRTNV GTSSISQMMF QVNASEGGMM HL
Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.