Factsheet for VIT_00s0211g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00090.t01	Wine grape	cytosol	48.65	96.92
VIT_00s0211g00120.t01	Wine grape	mitochondrion	95.95	95.95
VIT_00s0211g00100.t01	Wine grape	mitochondrion	45.75	95.56
VIT_00s0211g00160.t01	Wine grape	mitochondrion	40.35	88.56
VIT_18s0001g07960.t01	Wine grape	mitochondrion	87.26	87.6
Os03t0738400-01	Rice	mitochondrion	83.01	83.82
OQU91027	Sorghum	mitochondrion	82.24	83.04
TraesCS4A01G246100.1	Wheat	mitochondrion	81.08	82.35
TraesCS4B01G069300.1	Wheat	mitochondrion	81.08	82.35
TraesCS4D01G068100.1	Wheat	mitochondrion	81.08	82.35
HORVU4Hr1G011500.1	Barley	plasma membrane	81.27	78.99
VIT_00s0211g00080.t01	Wine grape	cytosol	22.39	63.74
VIT_05s0029g00310.t01	Wine grape	cytosol	51.54	56.69
VIT_04s0008g00770.t01	Wine grape	plastid	54.25	53.22
VIT_12s0034g02380.t01	Wine grape	cytosol	47.49	42.63
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	46.53	41.27

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100243976	wikigene:100243976	EntrezGene:100261289	wikigene:100261289	Gene3D:3.40.640.10	Gene3D:3.90.1150.10
EMBL:AM462035	ProteinID:CAN83325	ProteinID:CAN83325.1	ProteinID:CBI25699	ProteinID:CBI25699.3	ncoils:Coil
UniProt:D7T5B6	EMBL:FN595522	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100243976
wikigene:LOC100243976	EntrezGene:LOC100261289	wikigene:LOC100261289	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412
PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	UniParc:UPI0001BE2C4E	ArrayExpress:VIT_00s0211g00070	EnsemblPlantsGene:VIT_00s0211g00070	EnsemblPlants:VIT_00s0211g00070.t01	RefSeq:XP_002271676
RefSeq:XP_002271676.2	RefSeq:XP_002272058	RefSeq:XP_002272058.2	RefSeq:XP_010646403.1	RefSeq:XP_019073677.1	RefSeq:XP_019073678.1

Description

No Description!

Coordinates

chrUn:-:12846960..12878578

Molecular Weight (calculated)

57364.0 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.230

Length

518 amino acids

Sequence
(BLAST)

001: MAMAMALWRL SSSVNKPVRS VFNGGSIYYM ASLPNEAVYE EEKSRVTWPK QLNAPLGVVD PEIADIIELE KARQWKALEL VPSENFTSVS VMQAVGSIMT
101: NNVSEGYPGA RYYGGNEYMD MAESLCQKRA LEAFRLDPAK WGVNVQSLSG SPANFQVYTA LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLNESTGY IDYDQLEKSA TLFRPKLIVA GASAYARLYD YAHIRKVCDK QKAILLADMA HISGLVAAGV IPSPFEYADI VTTTTYKSLR GPRGAMIFFK
301: KGVKEVNKQG KEVLYDYEDK INQAVFPGLQ SAPHNHTIAG LAVALKQATT PEYKAYQEQV LSNCSKFAET LMKKGYELVS SGTENHLVLV NLKNKGIDGS
401: RVEKVLESVH IVANKNTVPG DVSAMVPSGI RMGTPALTSR GFVEKDFVKV AEYFDAAVTV AVKIKAETTG TKLKEFLATM QSSPHLQSEI AKLRHEVEEY
501: AKQFPTIGFE KETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.