CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU80649
OQU89635

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37930.1	OQU80649	AT4G24560.1	23232097
AT4G37930.1	OQU89635	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0738400-01	Rice	mitochondrion	94.74	94.74
TraesCS4B01G069300.1	Wheat	mitochondrion	91.62	92.16
TraesCS4A01G246100.1	Wheat	mitochondrion	91.62	92.16
TraesCS4D01G068100.1	Wheat	mitochondrion	91.62	92.16
CDX90395	Canola	cytosol	60.04	88.0
HORVU4Hr1G011500.1	Barley	plasma membrane	91.42	87.99
PGSC0003DMT400078666	Potato	mitochondrion	88.5	87.64
Solyc02g091560.2.1	Tomato	plastid	87.91	87.07
GSMUA_Achr7P27360_001	Banana	mitochondrion	85.96	85.8
KRG99502	Soybean	mitochondrion	86.55	85.71
CDX69344	Canola	mitochondrion	86.35	85.69
CDX75685	Canola	mitochondrion	86.35	85.69
Bra011796.1-P	Field mustard	mitochondrion	86.16	85.49
VIT_18s0001g07960.t01	Wine grape	mitochondrion	85.77	85.27
KRH45493	Soybean	mitochondrion	85.96	85.14
CDY49684	Canola	mitochondrion	85.77	85.11
AT4G37930.1	Thale cress	mitochondrion	85.58	84.91
VIT_00s0211g00120.t01	Wine grape	mitochondrion	85.58	84.75
Bra010622.1-P	Field mustard	mitochondrion	85.38	84.72
GSMUA_Achr6P23140_001	Banana	mitochondrion	85.77	84.62
Solyc04g076790.2.1	Tomato	nucleus	84.21	83.56
VIT_00s0211g00090.t01	Wine grape	cytosol	42.3	83.46
PGSC0003DMT400016362	Potato	mitochondrion	84.21	83.24
KRH16896	Soybean	mitochondrion	81.68	82.64
KRH72501	Soybean	mitochondrion	82.46	82.3
VIT_00s0211g00070.t01	Wine grape	mitochondrion	83.04	82.24
GSMUA_Achr3P30760_001	Banana	mitochondrion	83.24	81.49
KRH39500	Soybean	mitochondrion	81.29	80.66
VIT_00s0211g00100.t01	Wine grape	mitochondrion	38.01	78.63
EES08452	Sorghum	cytosol	53.02	57.75
EES16245	Sorghum	plastid	54.0	50.73
Zm00001d009738_P001	Maize	cytosol, plastid	21.44	50.69
EES01843	Sorghum	cytosol	48.93	42.33

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A0A1Z5S503	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0005840	GO:GO:0005886	GO:GO:0006544	GO:GO:0006545	GO:GO:0006563	GO:GO:0006730
GO:GO:0006950	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0008266	GO:GO:0009058
GO:GO:0009409	GO:GO:0009416	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009628	GO:GO:0009853	GO:GO:0009987	GO:GO:0010319	GO:GO:0016020
GO:GO:0016740	GO:GO:0019264	GO:GO:0022626	GO:GO:0030170	GO:GO:0035999	GO:GO:0046686
GO:GO:0048046	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	EnsemblPlants:OQU91027	ProteinID:OQU91027
ProteinID:OQU91027.1	ProteinID:OQU91028.1	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3001G097100	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0001C80C8B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:7459064..7464895

Molecular Weight (calculated)

56567.0 Da

IEP (calculated)

8.823

GRAVY (calculated)

-0.263

Length

513 amino acids

Sequence
(BLAST)

001: MAMATALRKL SANALRRQPL SRMTPLHYMA SLPATEERSG ITWPKQLNAP LEEVDPEIFD IIEHEKARQW KGLELIPSEN FTSVSVMQAV GSVMTNKYSE
101: GYPGARYYGG NEFIDMAESL CQKRALEAFR LDPAKWGVNV QPLSGSPANF QVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISATSI FFETMPYRLD
201: ESTGLIDYDQ LEKSAILFRP KLIVAGASAY ARLYDYDRMR KICNKQKAVL LADMAHISGL VAAGVIPSPF DYADVVTTTT HKSLRGPRGA MIFYRKGLKE
301: INKQGKEVMY DFEDKINAAV FPGLQGGPHN HTITGLAVAL KQATTPEYRA YQEQVITNCA KFAQSLTAKG YELVSGGTDN HLVLVNLKNK GIDGSRVEKV
401: LESVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVADFFD AAVNLAVKIK AATTGGTKLK DFVATLQSDS IQAEIAKLRH DVEEYAKQFP
501: TIGFEKETMK YKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.