Factsheet for Solyc02g091560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078666	Potato	mitochondrion	98.65	98.65
KRH45493	Soybean	mitochondrion	91.31	91.31
KRG99502	Soybean	mitochondrion	90.73	90.73
Os03t0738400-01	Rice	mitochondrion	88.03	88.89
OQU91027	Sorghum	mitochondrion	87.07	87.91
TraesCS4D01G068100.1	Wheat	mitochondrion	85.52	86.86
TraesCS4B01G069300.1	Wheat	mitochondrion	85.52	86.86
TraesCS4A01G246100.1	Wheat	mitochondrion	85.52	86.86
Solyc04g076790.2.1	Tomato	nucleus	85.33	85.49
KRH39500	Soybean	mitochondrion	82.82	82.98
HORVU4Hr1G011500.1	Barley	plasma membrane	85.33	82.93
Solyc05g053810.2.1	Tomato	nucleus, plastid	53.67	59.02
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	52.7	57.96
Solyc08g065490.2.1	Tomato	nucleus, plastid	54.83	54.2
Solyc12g095930.1.1	Tomato	plastid	54.83	53.89
Zm00001d009738_P001	Maize	cytosol, plastid	21.04	50.23
Solyc01g104000.2.1	Tomato	plastid	48.46	42.26

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004372	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886
GO:GO:0006544	GO:GO:0006545	GO:GO:0006563	GO:GO:0006730	GO:GO:0006950	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0008266	GO:GO:0009058	GO:GO:0009409	GO:GO:0009416
GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628
GO:GO:0009853	GO:GO:0009987	GO:GO:0010319	GO:GO:0016020	GO:GO:0016740	GO:GO:0019264
GO:GO:0022626	GO:GO:0030170	GO:GO:0035999	GO:GO:0046686	GO:GO:0048046	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4BCV4	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:Solyc02g091560.2	EnsemblPlants:Solyc02g091560.2.1	UniParc:UPI00027679A6	SEG:seg

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:K4BCV4]

Coordinates

chr2:+:52822446..52828941

Molecular Weight (calculated)

57235.6 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.297

Length

518 amino acids

Sequence
(BLAST)

001: MAMAIALRRL SATIDKPVKS LYNGGSIYYM SSLPNEAVYD KEKSGVAWPK QLNAPLEVVD PEIADIIEHE KARQWKGLEL IPSENFTSVS VMQAVGSVMT
101: NKYSEGYPGA RYYGGNEYID MAETLCQKRA LEAFRLDPAK WGVNVQPLSG SPANFHVYTA LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLDESTGY IDYDQLEKSA TLFRPKLIVA GASAYARLYD YDRIRKVCNK QKAILLADMA HISGLVAAGV IPSPFDYADV VTTTTHKSLR GPRGAMIFYR
301: KGVKEVNKQG KEVFYDYEDK INQAVFPGLQ GGPHNHTITG LAVALKQATT PEYRAYQEQV LSNSAKFAQA LEEKGYELVS GGTDNHLVLV NMKNKGIDGS
401: RVEKVLEAVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFLEEDFVKV ADFFDAAVKI AVKVKAETQG TKLKDFVSTL ESSAPIKSEI AKLRQDVEEY
501: AKQFPTIGFE KETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.