Factsheet for Zm00001d009738_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d020769_P005
Zm00001d050489_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37930.1	Zm00001d020769_P005	AT4G24560.1	23232097
AT4G37930.1	Zm00001d050489_P001	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00160.t01	Wine grape	mitochondrion	39.63	36.44
PGSC0003DMT400065000	Potato	peroxisome	21.2	22.22
Os03t0738400-01	Rice	mitochondrion	51.15	21.64
OQU91027	Sorghum	mitochondrion	50.69	21.44
CDX75685	Canola	mitochondrion	50.69	21.28
AT4G37930.1	Thale cress	mitochondrion	50.23	21.08
CDX69344	Canola	mitochondrion	50.23	21.08
Bra011796.1-P	Field mustard	mitochondrion	50.23	21.08
KRH45493	Soybean	mitochondrion	50.23	21.04
Solyc02g091560.2.1	Tomato	plastid	50.23	21.04
Bra010622.1-P	Field mustard	mitochondrion	49.77	20.89
KRG99502	Soybean	mitochondrion	49.77	20.85
TraesCS4D01G068100.1	Wheat	mitochondrion	48.85	20.78
TraesCS4A01G246100.1	Wheat	mitochondrion	48.85	20.78
TraesCS4B01G069300.1	Wheat	mitochondrion	48.85	20.78
GSMUA_Achr6P23140_001	Banana	mitochondrion	49.77	20.77
CDY49684	Canola	mitochondrion	49.31	20.7
CDY49212	Canola	mitochondrion	48.39	20.63
CDX96315	Canola	mitochondrion	47.93	20.23
KRH72501	Soybean	mitochondrion	47.93	20.23
KRH16896	Soybean	mitochondrion	47.0	20.12
Bra016147.1-P	Field mustard	mitochondrion	48.39	20.08
GSMUA_Achr7P27360_001	Banana	mitochondrion	47.47	20.04
HORVU4Hr1G011500.1	Barley	plasma membrane	48.85	19.89
CDX72795	Canola	mitochondrion	48.39	19.81
Solyc04g076790.2.1	Tomato	nucleus	47.0	19.73
AT5G26780.3	Thale cress	mitochondrion	47.0	19.14
KRH39500	Soybean	mitochondrion	44.24	18.57
GSMUA_Achr3P30760_001	Banana	mitochondrion	43.32	17.94
Zm00001d049234_P001	Maize	plastid	37.79	15.59
Zm00001d012247_P001	Maize	cytosol	37.79	14.02
Zm00001d042661_P001	Maize	cytosol	37.79	13.95
Zm00001d030859_P001	Maize	plastid	39.17	13.51
Bra003928.1-P	Field mustard	mitochondrion	46.08	8.98
CDX68316	Canola	mitochondrion	48.39	8.97
CDX90395	Canola	cytosol	10.14	6.29
KRH18830	Soybean	cytosol, peroxisome, plastid	3.69	6.2
Zm00001d040457_P001	Maize	mitochondrion	1.38	3.09

Protein Annotations

Gene3D:3.40.50.1440	MapMan:35.1	UniProt:A0A1D6FLE9	ProteinID:AQK92523.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016787	InterPro:IPR036525	PFAM:PF00091	PFAM:PF00464	PRINTS:PR01161	PANTHER:PTHR11680
PANTHER:PTHR11680:SF26	InterPro:PyrdxlP-dep_Trfase	SMART:SM00864	SUPFAM:SSF52490	SUPFAM:SSF53383	InterPro:Tubulin
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000843F7A5	EnsemblPlantsGene:Zm00001d009738	EnsemblPlants:Zm00001d009738_P001	EnsemblPlants:Zm00001d009738_T001

Description

Tubulin gamma-2 chain

Coordinates

chr8:-:78664431..78667427

Molecular Weight (calculated)

24152.7 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.400

Length

217 amino acids

Sequence
(BLAST)

001: MRAASAGSVP TDPHPRWPTA MRKAGAGSAD GTKQWVHRRH ASHWRQWTKQ LNAPLEEVDP EIADIIEHEK GLELIPSKNF TSVSVMQAVG SVMTNKYSKG
101: YPGARYYGGN EFIDMAESLC QKRALEAFRL DPTKWGGFQV CHSLGGGTGS RMGTLLISKI REEYPNRMIL TFSVFPSPKV SDTVVEPYNA TMSVHQLVEN
201: ADECMVLDNE ALYDICF

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.