Factsheet for GSMUA_Achr6P23140_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P27360_001	Banana	mitochondrion	89.04	90.08
VIT_18s0001g07960.t01	Wine grape	mitochondrion	86.15	86.82
GSMUA_Achr3P30760_001	Banana	mitochondrion	86.73	86.07
Os03t0738400-01	Rice	mitochondrion	84.81	85.96
OQU91027	Sorghum	mitochondrion	84.62	85.77
TraesCS4D01G068100.1	Wheat	mitochondrion	83.85	85.49
TraesCS4B01G069300.1	Wheat	mitochondrion	83.85	85.49
TraesCS4A01G246100.1	Wheat	mitochondrion	83.85	85.49
CDX96315	Canola	mitochondrion	83.27	84.24
PGSC0003DMT400016362	Potato	mitochondrion	84.04	84.2
CDY49212	Canola	mitochondrion	82.31	84.09
KRH16896	Soybean	mitochondrion	81.92	84.02
Solyc04g076790.2.1	Tomato	nucleus	83.46	83.95
KRH72501	Soybean	mitochondrion	82.12	83.07
Bra016147.1-P	Field mustard	mitochondrion	82.88	82.41
CDX72795	Canola	mitochondrion	83.27	81.7
HORVU4Hr1G011500.1	Barley	plasma membrane	83.65	81.61
AT5G26780.3	Thale cress	mitochondrion	82.88	80.86
GSMUA_Achr10P...	Banana	cytosol	49.04	67.11
GSMUA_Achr6P06520_001	Banana	cytosol	49.62	57.98
GSMUA_Achr9P01620_001	Banana	cytosol	47.5	56.39
GSMUA_Achr9P07310_001	Banana	cytosol	43.65	56.05
GSMUA_Achr8P00310_001	Banana	cytosol	27.12	55.95
Zm00001d009738_P001	Maize	cytosol, plastid	20.77	49.77
GSMUA_Achr6P17750_001	Banana	cytosol	45.77	41.61
GSMUA_Achr10P...	Banana	cytosol	45.19	40.87
Bra003928.1-P	Field mustard	mitochondrion	79.04	36.93
CDX68316	Canola	mitochondrion	83.08	36.92
GSMUA_Achr10P...	Banana	vacuole	11.92	36.47

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSMUA_Achr6G23140_001	EnsemblPlants:GSMUA_Achr6P23140_001
EnsemblPlants:GSMUA_Achr6T23140_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0T9G2	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002969A90	:

Description

Serine hydroxymethyltransferase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr6G23140_001]

Coordinates

chr6:-:23201798..23210764

Molecular Weight (calculated)

57232.8 Da

IEP (calculated)

8.245

GRAVY (calculated)

-0.219

Length

520 amino acids

Sequence
(BLAST)

001: MAMATALRRL NSSTSAAVRR HPFARGSLCS MSSLPSEAAY GKERSCVTWT KQLNAPLEVV DPEIAEIIEL EKARQWKGLE LIPSENFTSV SVMQAVGSVM
101: INKYSEGYPG ARYYGGNEYI DMAESLCQKR ALEAFGLDPS KWGVNVQSLS GSPSNFQVYT ALLKPHERIM ALDLPHGGHL SHGYQTDTKK ISAVSIFFET
201: MPYRLDESTG YIDYDQLEKS ATLFRPKLIV AGASAYARLY DYERIRKVCD KQKAILLADM AHISGLVAAG VIPSPFKYAD IVTTTTHKSL RGPRGAMIFF
301: RKGLKEINKK GQEVMYDFED KINAAVFPGL QGGPHNHTIS GLAVALKQAT TPEFKAYQEQ VLKNCAKFAE CLVEKGYELV SGGTDNHLVL VNLKNKGIDG
401: SRVEKVLELA HIAANKNTVP GDVSAMVPGG IRMGTPALTS RGFVEEDFAK VADFFDIAVK LALKIKAETK GGSKLKDFVA TIQTDANIQY EISKLCHEVE
501: DYAKQFPTIG FEKETMKYSD

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.