Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P07310_001 | Banana | cytosol | 92.86 | 57.78 |
| GSMUA_Achr6P06520_001 | Banana | cytosol | 95.63 | 54.16 |
| VIT_05s0029g00310.t01 | Wine grape | cytosol | 90.08 | 48.2 |
| Solyc05g053810.2.1 | Tomato | nucleus, plastid | 89.29 | 47.77 |
| Os11t0455800-01 | Rice | plasma membrane | 88.89 | 47.56 |
| PGSC0003DMT400040717 | Potato | cytosol | 88.89 | 47.56 |
| EES08452 | Sorghum | cytosol | 88.49 | 47.35 |
| TraesCS2D01G493600.1 | Wheat | cytosol | 88.1 | 47.13 |
| TraesCS2A01G493700.1 | Wheat | plastid | 88.1 | 47.13 |
| GSMUA_Achr9P01620_001 | Banana | cytosol | 81.75 | 47.03 |
| TraesCS2B01G521700.1 | Wheat | cytosol | 87.7 | 46.92 |
| Solyc12g098490.1.1 | Tomato | extracellular, nucleus, unclear | 87.3 | 46.71 |
| PGSC0003DMT400011868 | Potato | cytosol | 87.3 | 46.71 |
| Bra032749.1-P | Field mustard | cytosol | 86.9 | 46.5 |
| CDY69223 | Canola | cytosol | 86.51 | 46.28 |
| AT4G13930.1 | Thale cress | cytosol | 86.11 | 46.07 |
| KRH58850 | Soybean | cytosol | 84.92 | 44.68 |
| Zm00001d049234_P001 | Maize | plastid | 88.89 | 42.59 |
| CDY50421 | Canola | cytosol | 72.62 | 42.17 |
| CDY01173 | Canola | cytosol | 72.62 | 42.17 |
| CDY47310 | Canola | cytosol | 72.22 | 41.94 |
| Bra014001.1-P | Field mustard | cytosol | 72.22 | 41.94 |
| HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 88.1 | 40.29 |
| AT4G13890.1 | Thale cress | cytosol | 75.0 | 40.21 |
| KRH42751 | Soybean | endoplasmic reticulum, nucleus | 87.3 | 38.46 |
| GSMUA_Achr10P... | Banana | cytosol | 53.17 | 35.26 |
| GSMUA_Achr7P27360_001 | Banana | mitochondrion | 55.56 | 27.24 |
| GSMUA_Achr6P23140_001 | Banana | mitochondrion | 55.95 | 27.12 |
| GSMUA_Achr3P30760_001 | Banana | mitochondrion | 53.97 | 25.95 |
| GSMUA_Achr6P17750_001 | Banana | cytosol | 58.33 | 25.7 |
| GSMUA_Achr10P... | Banana | cytosol | 56.75 | 24.87 |
| Zm00001d040457_P001 | Maize | mitochondrion | 5.16 | 13.4 |
| GSMUA_Achr10P... | Banana | vacuole | 1.19 | 1.76 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | Gene3D:3.40.640.10 |
| Gene3D:3.90.1150.10 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0030170 |
| EnsemblPlantsGene:GSMUA_Achr8G00310_001 | EnsemblPlants:GSMUA_Achr8P00310_001 | EnsemblPlants:GSMUA_Achr8T00310_001 | InterPro:IPR015421 | InterPro:IPR015422 | UniProt:M0TLD3 |
| PFAM:PF00464 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF11 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 |
| InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI00029661F6 | SEG:seg | : |
Description
Serine hydroxymethyltransferase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00310_001]
Coordinates
chr8:-:248250..251116
Molecular Weight (calculated)
27345.1 Da
IEP (calculated)
8.951
GRAVY (calculated)
-0.150
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHISGLVAA QEAANPFEFC DVVTTTTHKS LRGPRSGMIF YRKGPKPPKK GQPENAVYDF EDKINFAVFP ALQGGPHNHQ IAALAVALKQ AMSPGFKAYA
101: KQVRANAVAL GNYLMSKGYK LVTDGTENHL VLWDLRPLGL TGNKVEKLCD LCNITVNKNA VFGDSSALAP GGVRIGTPAM TSRGLVEEDF KQIAEFLHQA
201: VTLCLCIQKE HGKLLKDFNK GLVNNKDIEE LKAAVEKFAA SFDMPGFQLP ST
101: KQVRANAVAL GNYLMSKGYK LVTDGTENHL VLWDLRPLGL TGNKVEKLCD LCNITVNKNA VFGDSSALAP GGVRIGTPAM TSRGLVEEDF KQIAEFLHQA
201: VTLCLCIQKE HGKLLKDFNK GLVNNKDIEE LKAAVEKFAA SFDMPGFQLP ST
001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
Arabidopsis Description
SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.