Factsheet for PGSC0003DMT400040717

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053810.2.1	Tomato	nucleus, plastid	98.94	98.94
PGSC0003DMT400011868	Potato	cytosol	93.42	93.42
VIT_05s0029g00310.t01	Wine grape	cytosol	91.93	91.93
CDY01173	Canola	cytosol	83.23	90.32
CDY50421	Canola	cytosol	83.23	90.32
CDY69223	Canola	cytosol	90.23	90.23
Bra014001.1-P	Field mustard	cytosol	83.01	90.09
CDY47310	Canola	cytosol	83.01	90.09
Bra032749.1-P	Field mustard	cytosol	90.02	90.02
AT4G13930.1	Thale cress	cytosol	89.38	89.38
KRH58850	Soybean	cytosol	90.45	88.94
GSMUA_Achr8P00310_001	Banana	cytosol	47.56	88.89
GSMUA_Achr9P01620_001	Banana	cytosol	82.59	88.81
GSMUA_Achr6P06520_001	Banana	cytosol	83.65	88.54
Zm00001d040457_P001	Maize	mitochondrion	17.83	86.6
GSMUA_Achr9P07310_001	Banana	cytosol	74.31	86.42
EES08452	Sorghum	cytosol	85.14	85.14
TraesCS2D01G493600.1	Wheat	cytosol	84.5	84.5
TraesCS2A01G493700.1	Wheat	plastid	84.5	84.5
Os11t0455800-01	Rice	plasma membrane	84.5	84.5
TraesCS2B01G521700.1	Wheat	cytosol	84.29	84.29
AT4G13890.1	Thale cress	cytosol	78.98	79.15
Zm00001d049234_P001	Maize	plastid	85.35	76.43
KRH42751	Soybean	endoplasmic reticulum, nucleus	92.57	76.22
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	84.08	71.87
PGSC0003DMT400078666	Potato	mitochondrion	58.39	53.09
PGSC0003DMT400016362	Potato	mitochondrion	58.17	52.79
PGSC0003DMT400005611	Potato	cytosol, plastid	57.54	51.72
PGSC0003DMT400075571	Potato	plastid	57.11	51.14
PGSC0003DMT400061157	Potato	cytosol	62.42	49.49
PGSC0003DMT400002684	Potato	plastid	18.68	41.71
PGSC0003DMT400065000	Potato	peroxisome	16.99	38.65

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:102580488	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1BAA6	HAMAP:MF_00051	PFAM:PF00464	EnsemblPlantsGene:PGSC0003DMG400015745
PGSC:PGSC0003DMG400015745	EnsemblPlants:PGSC0003DMT400040717	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI000296AB54	RefSeq:XP_006365464.1	SEG:seg	:	:	:

Description

Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400015745]

Coordinates

chr5:-:49248186..49251935

Molecular Weight (calculated)

52047.2 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.334

Length

471 amino acids

Sequence
(BLAST)

001: MDPVTVWGNE PLSTVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEYIDQIEN LTRSRALEAF HLDPTKWGVN
101: VQPYSGSPAN FAAYTAVLNP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNSTNGYIDY DKLEEKALDF RPKLIICGGS AYPRDWDYKR
201: FKEVADKCGA LLLCDMAHIS GLVAAQEAAN PFEYCDLVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEN AVYEFEDKIN FAVFPSLQGG PHNHQIGALA
301: VALKQAATPG FKVYAKQVKA NAVALGDYLM SKGYKLVTGG TENHLVLWDL RPLGLTGNKV EKLCDLCNIT VNKNAVFGDS SALAPGGVRI GTPAMTSRGL
401: VEKDFEQIAE FLHRAVTITL NIQKEFGKLL KDFNKGLVNN KEIEELKVDV EKFSASFDMP GFKMSEMKYQ D

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.