Factsheet for PGSC0003DMT400061157

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104000.2.1	Tomato	plastid	97.47	97.47
KRH26369	Soybean	cytosol	75.08	79.22
VIT_12s0034g02380.t01	Wine grape	cytosol	76.77	79.03
KRH44066	Soybean	plastid	74.41	78.09
TraesCS3B01G417800.1	Wheat	cytosol	63.3	73.01
GSMUA_Achr6P17750_001	Banana	cytosol	66.16	68.71
TraesCS3D01G378700.1	Wheat	cytosol	67.17	68.44
TraesCS3A01G385600.1	Wheat	cytosol	67.17	68.21
HORVU3Hr1G082070.2	Barley	cytosol	66.83	67.63
Zm00001d012247_P001	Maize	cytosol	65.82	66.84
Zm00001d042661_P001	Maize	cytosol	66.16	66.84
EES01843	Sorghum	cytosol	65.99	66.1
Os01t0874900-01	Rice	extracellular	66.67	66.0
GSMUA_Achr10P...	Banana	cytosol	62.29	64.35
Os05t0429000-01	Rice	cytosol	63.13	63.88
PGSC0003DMT400011868	Potato	cytosol	50.0	63.06
PGSC0003DMT400040717	Potato	cytosol	49.49	62.42
GSMUA_Achr10P...	Banana	vacuole	15.15	52.94
PGSC0003DMT400078666	Potato	mitochondrion	41.75	47.88
PGSC0003DMT400075571	Potato	plastid	42.09	47.53
PGSC0003DMT400005611	Potato	cytosol, plastid	41.92	47.52
PGSC0003DMT400016362	Potato	mitochondrion	41.25	47.21
PGSC0003DMT400002684	Potato	plastid	14.81	41.71
PGSC0003DMT400065000	Potato	peroxisome	12.96	37.2

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:102603398	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1C756	HAMAP:MF_00051	PFAM:PF00464	EnsemblPlantsGene:PGSC0003DMG400023799
PGSC:PGSC0003DMG400023799	EnsemblPlants:PGSC0003DMT400061157	ScanProsite:PS00096	ScanProsite:PS00678	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI000295908F	InterPro:WD40_repeat_CS	RefSeq:XP_006349365.1	SEG:seg	:	:

Description

Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400023799]

Coordinates

chr1:+:80652570..80658187

Molecular Weight (calculated)

65563.9 Da

IEP (calculated)

7.226

GRAVY (calculated)

-0.370

Length

594 amino acids

Sequence
(BLAST)

001: MDLSQSQSSN LSLGFITHVS PVMTAPNRSH IVDDSIAFQI DSRVKDQSYP VTPVPLQLMD KQTKENGKEG GESADEERDV EEFRILGHSM CIKRKRDTDA
101: TSSSSSSKSF RATSSNENLL GLESRRNAVR AWGNQGLQAA DPDIFEIMEK EKQRQYKGIE LIASENFVCK AVMEALGSHL TNKYSEGAPG ARYYGGNQFI
201: DEIETLCCQR ALTAFGLDPE NWGVNVQPYS CTSANFAVYT GLLLPGDRIM GLDTPSGGNT SHGYYLPNGR RVSGASIFFE SLSYKVDPQT GYVDFDKLEE
301: RALDFRPKIL ICGGSSYPRE WDYAKFRQIA DKCGAVLLCD MAQISGLIAA KECASPFDYC DIVTSTTHKS LRGPRGGIIF YRKGSKPRKR GLLLNQGDGS
401: DKYDFEEKIN FAVFPALQGG PHNNHIAALA IALKQVATPD YKAYMQQVKR NAQALAAALL RRNCRLVTGG TDNHMILWDL RNLGLTGKNF EKVCELCHIT
501: LNKVMVFDDN GSITPGGVRI GTPAMTSRGC IESDFDTMAD FLLKAAQITN SIQREHGKLA KGFLKGVENN KDVIELRTRV ENFASLFAMP GFEV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.