Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400002684 | |
PGSC0003DMT400073383 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G32520.1 | PGSC0003DMT400073383 | AT3G15660.1 | 21798944 |
AT4G32520.1 | PGSC0003DMT400002684 | AT4G32520.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH11117 | Soybean | plastid | 65.88 | 61.23 |
KRH07754 | Soybean | cytosol, nucleus, peroxisome | 49.76 | 48.61 |
KRH26204 | Soybean | cytosol | 42.65 | 45.23 |
PGSC0003DMT400075571 | Potato | plastid | 89.57 | 35.93 |
PGSC0003DMT400005611 | Potato | cytosol, plastid | 74.41 | 29.96 |
KRH21130 | Soybean | plastid | 66.82 | 26.31 |
AT4G32520.1 | Thale cress | plastid | 65.88 | 26.28 |
Bra040080.1-P | Field mustard | plastid | 63.03 | 25.14 |
PGSC0003DMT400065000 | Potato | peroxisome | 23.22 | 23.67 |
CDY39889 | Canola | plastid | 62.56 | 22.76 |
CDY23328 | Canola | golgi, plasma membrane | 62.09 | 21.13 |
GSMUA_Achr10P... | Banana | cytosol | 34.6 | 19.21 |
PGSC0003DMT400078666 | Potato | mitochondrion | 46.92 | 19.11 |
PGSC0003DMT400011868 | Potato | cytosol | 41.71 | 18.68 |
PGSC0003DMT400040717 | Potato | cytosol | 41.71 | 18.68 |
PGSC0003DMT400016362 | Potato | mitochondrion | 43.6 | 17.73 |
PGSC0003DMT400061157 | Potato | cytosol | 41.71 | 14.81 |
KRH11116 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
EntrezGene:107058680 | Gene3D:3.40.640.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 |
GO:GO:0009570 | GO:GO:0016740 | InterPro:IPR015421 | UniProt:M0ZKG9 | PFAM:PF00464 | EnsemblPlantsGene:PGSC0003DMG400001035 |
PGSC:PGSC0003DMG400001035 | EnsemblPlants:PGSC0003DMT400002684 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF20 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major |
SUPFAM:SSF53383 | UniParc:UPI0002969B99 | RefSeq:XP_015160181.1 | SEG:seg | : | : |
Description
Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400001035]
Coordinates
chr7:+:54444632..54445267
Molecular Weight (calculated)
23200.6 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.286
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MEACSRAAVV GSSLQQSVWV KGSTFPLKGE VKLNRVKLWS VKPCKASQLE GSLVSRRPPS SVSVPIPEME SAGNNFIDYG LGEADPEVRG IIDKEKERQF
101: RSLELIASEN FTSRAVMEAV GSCLTNKYSE GLPGKRYYGG NEYIDELEIL CQERALATFS LDGKQWGINV QPLPGSPANF EVYTAVLNPH DRIMGLDLPH
201: GGSFVPWIYD S
101: RSLELIASEN FTSRAVMEAV GSCLTNKYSE GLPGKRYYGG NEYIDELEIL CQERALATFS LDGKQWGINV QPLPGSPANF EVYTAVLNPH DRIMGLDLPH
201: GGSFVPWIYD S
001: MEPVYSWGNT HLDFVDPEIY DLIEKEKHRQ CRGIELIAAE NFTSVAVMEA LGSCLTNKYS EGMPGNRYYG GTEFIDEIES LCRSRSLEAF HCNPEKWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHITHGYY SSGGKNISAT SIYFENLPYK VDSKTGYIDY DKLEEKAMDF RPKLIICGGT SYPREWDYAR
201: FRAVADKVGA FLLCDMAHNS ALVAAQEAAD PFEYCDVVTT STHKSLRGPR AGMIFYRKGP KPAKKGQPEG EVYDFDAKIN SAVFPALQSG PHNNKIGALA
301: VALKQVMAPS FKVYAKQVKA NAACLASYLI NKGYTLVTDG TDNHLILWDL RPLGLTGNKV EKVCELCYIT LNRNAVFGDT SFLAPGGVRI GMREL
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHITHGYY SSGGKNISAT SIYFENLPYK VDSKTGYIDY DKLEEKAMDF RPKLIICGGT SYPREWDYAR
201: FRAVADKVGA FLLCDMAHNS ALVAAQEAAD PFEYCDVVTT STHKSLRGPR AGMIFYRKGP KPAKKGQPEG EVYDFDAKIN SAVFPALQSG PHNNKIGALA
301: VALKQVMAPS FKVYAKQVKA NAACLASYLI NKGYTLVTDG TDNHLILWDL RPLGLTGNKV EKVCELCYIT LNRNAVFGDT SFLAPGGVRI GMREL
Arabidopsis Description
SHM5Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.