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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 3
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH11117 Soybean plastid 65.88 61.23
KRH07754 Soybean cytosol, nucleus, peroxisome 49.76 48.61
KRH26204 Soybean cytosol 42.65 45.23
PGSC0003DMT400075571 Potato plastid 89.57 35.93
PGSC0003DMT400005611 Potato cytosol, plastid 74.41 29.96
KRH21130 Soybean plastid 66.82 26.31
AT4G32520.1 Thale cress plastid 65.88 26.28
Bra040080.1-P Field mustard plastid 63.03 25.14
PGSC0003DMT400065000 Potato peroxisome 23.22 23.67
CDY39889 Canola plastid 62.56 22.76
CDY23328 Canola golgi, plasma membrane 62.09 21.13
GSMUA_Achr10P... Banana cytosol 34.6 19.21
PGSC0003DMT400078666 Potato mitochondrion 46.92 19.11
PGSC0003DMT400011868 Potato cytosol 41.71 18.68
PGSC0003DMT400040717 Potato cytosol 41.71 18.68
PGSC0003DMT400016362 Potato mitochondrion 43.6 17.73
PGSC0003DMT400061157 Potato cytosol 41.71 14.81
KRH11116 Soybean cytosol 0.0 0.0
Protein Annotations
EntrezGene:107058680Gene3D:3.40.640.10MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0004372
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0009507GO:GO:0009536
GO:GO:0009570GO:GO:0016740InterPro:IPR015421UniProt:M0ZKG9PFAM:PF00464EnsemblPlantsGene:PGSC0003DMG400001035
PGSC:PGSC0003DMG400001035EnsemblPlants:PGSC0003DMT400002684PANTHER:PTHR11680PANTHER:PTHR11680:SF20InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383UniParc:UPI0002969B99RefSeq:XP_015160181.1SEG:seg::
Description
Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400001035]
Coordinates
chr7:+:54444632..54445267
Molecular Weight (calculated)
23200.6 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.286
Length
211 amino acids
Sequence
(BLAST)
001: MEACSRAAVV GSSLQQSVWV KGSTFPLKGE VKLNRVKLWS VKPCKASQLE GSLVSRRPPS SVSVPIPEME SAGNNFIDYG LGEADPEVRG IIDKEKERQF
101: RSLELIASEN FTSRAVMEAV GSCLTNKYSE GLPGKRYYGG NEYIDELEIL CQERALATFS LDGKQWGINV QPLPGSPANF EVYTAVLNPH DRIMGLDLPH
201: GGSFVPWIYD S
Best Arabidopsis Sequence Match ( AT4G13890.2 )
(BLAST)
001: MEPVYSWGNT HLDFVDPEIY DLIEKEKHRQ CRGIELIAAE NFTSVAVMEA LGSCLTNKYS EGMPGNRYYG GTEFIDEIES LCRSRSLEAF HCNPEKWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHITHGYY SSGGKNISAT SIYFENLPYK VDSKTGYIDY DKLEEKAMDF RPKLIICGGT SYPREWDYAR
201: FRAVADKVGA FLLCDMAHNS ALVAAQEAAD PFEYCDVVTT STHKSLRGPR AGMIFYRKGP KPAKKGQPEG EVYDFDAKIN SAVFPALQSG PHNNKIGALA
301: VALKQVMAPS FKVYAKQVKA NAACLASYLI NKGYTLVTDG TDNHLILWDL RPLGLTGNKV EKVCELCYIT LNRNAVFGDT SFLAPGGVRI GMREL
Arabidopsis Description
SHM5Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.