Factsheet for PGSC0003DMT400016362

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076790.2.1	Tomato	nucleus	97.88	98.26
VIT_18s0001g07960.t01	Wine grape	mitochondrion	86.9	87.4
CDY49212	Canola	mitochondrion	84.97	86.64
TraesCS4D01G068100.1	Wheat	mitochondrion	84.59	86.08
TraesCS4B01G069300.1	Wheat	mitochondrion	84.59	86.08
TraesCS4A01G246100.1	Wheat	mitochondrion	84.59	86.08
CDX96315	Canola	mitochondrion	85.16	85.99
PGSC0003DMT400078666	Potato	mitochondrion	85.55	85.71
GSMUA_Achr7P27360_001	Banana	mitochondrion	84.59	85.41
KRH16896	Soybean	mitochondrion	83.43	85.4
Os03t0738400-01	Rice	mitochondrion	84.2	85.19
KRH72501	Soybean	mitochondrion	84.01	84.82
Bra016147.1-P	Field mustard	mitochondrion	85.16	84.51
OQU91027	Sorghum	mitochondrion	83.24	84.21
GSMUA_Achr6P23140_001	Banana	mitochondrion	84.2	84.04
CDX72795	Canola	mitochondrion	85.36	83.58
AT5G26780.3	Thale cress	mitochondrion	84.97	82.74
HORVU4Hr1G011500.1	Barley	plasma membrane	84.78	82.55
GSMUA_Achr3P30760_001	Banana	mitochondrion	82.08	81.3
PGSC0003DMT400011868	Potato	cytosol	52.99	58.39
PGSC0003DMT400040717	Potato	cytosol	52.79	58.17
PGSC0003DMT400005611	Potato	cytosol, plastid	54.34	53.82
PGSC0003DMT400065000	Potato	peroxisome	21.39	53.62
PGSC0003DMT400075571	Potato	plastid	53.56	52.85
PGSC0003DMT400002684	Potato	plastid	17.73	43.6
PGSC0003DMT400061157	Potato	cytosol	47.21	41.25
Bra003928.1-P	Field mustard	mitochondrion	81.89	38.19
CDX68316	Canola	mitochondrion	85.55	37.95

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:102599354	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	UniProt:M1A7K0	HAMAP:MF_00051	PFAM:PF00464	EnsemblPlantsGene:PGSC0003DMG400006396	PGSC:PGSC0003DMG400006396
EnsemblPlants:PGSC0003DMT400016362	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF26	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002950972
RefSeq:XP_006364981.1	SEG:seg	:	:	:	:

Description

Serine hydroxymethyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400006396]

Coordinates

chr4:+:65574804..65580712

Molecular Weight (calculated)

57408.9 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.262

Length

519 amino acids

Sequence
(BLAST)

001: MAMAMALRKI SYGSSINLVR PLSNGSSVHY MSSLPNQAVR NREDPRVTWI KQLNAPLEEI DPEIADIIEL EKARQWKGLE LIPSENFTSL SVMQAVGSVM
101: TNKYSEGYPG ARYYGGNEYI DMAERLCQKR ALEVFNLDPA KWGVNVQSLS GSPSNFQVYT ALLKPHERIM ALDLPHGGHL SHGYQTDTKK ISAVSIFFET
201: MPYRLDESTG YIDYEQLEKS ATLFRPKLIV AGASAYARLY DYARIRKVCD KQKAVLLADM AHISGLVAAG VIPSPFEYAD VVTTTTHKSL RGPRGAMIFF
301: RKGVKEINKK GEEVMYDYED KINQAVFPGL QGGPHNHTIS GLAVALKQVM TPEYKAYQEQ VLSNCSKFAE SLLAAGYDLV SGGTENHLVL VNLRNKGIDG
401: SRVEKVLESV HIAANKNTVP GDVSAMVPGG IRMGTPALTS RGFIEEDFVK VAEFFDSAVK LALKVKAEAK GTKLKDFVAT LSSDSNIQSE VAKLRQDVED
501: YAKQFPTVGF EKETMKYKN

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.