CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96315	Canola	mitochondrion	96.86	95.91
CDX72795	Canola	mitochondrion	97.25	93.4
AT5G26780.3	Thale cress	mitochondrion	94.5	90.24
VIT_18s0001g07960.t01	Wine grape	mitochondrion	88.02	86.82
CDX90395	Canola	cytosol	59.14	86.0
PGSC0003DMT400016362	Potato	mitochondrion	86.64	84.97
Solyc04g076790.2.1	Tomato	nucleus	86.25	84.91
KRH16896	Soybean	mitochondrion	84.09	84.42
KRH72501	Soybean	mitochondrion	84.87	84.05
CDX69344	Canola	mitochondrion	85.27	83.95
CDX75685	Canola	mitochondrion	84.87	83.56
GSMUA_Achr7P27360_001	Banana	mitochondrion	84.09	83.27
CDY49684	Canola	mitochondrion	84.28	82.98
GSMUA_Achr6P23140_001	Banana	mitochondrion	84.09	82.31
GSMUA_Achr3P30760_001	Banana	mitochondrion	81.93	79.58
CDY01173	Canola	cytosol	48.92	57.37
CDY47310	Canola	cytosol	48.92	57.37
CDY50421	Canola	cytosol	48.92	57.37
CDY69223	Canola	cytosol	53.05	57.32
Zm00001d009738_P001	Maize	cytosol, plastid	20.63	48.39
CDY39889	Canola	plastid	54.81	48.1
CDY23328	Canola	golgi, plasma membrane	55.01	45.16
CDX68316	Canola	mitochondrion	99.02	43.08
CDY30643	Canola	cytosol	48.92	43.01
CDY41499	Canola	cytosol	48.13	42.91
CDY38837	Canola	cytosol	47.15	42.63
CDX91734	Canola	cytosol	49.12	42.44
CDY41886	Canola	cytosol	48.92	42.2
CDY04695	Canola	cytosol	48.53	42.08
CDY53135	Canola	cytosol	7.66	28.68
CDY47659	Canola	cytosol	7.66	28.68

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078IGW6	UniProt:A0A078IGW6	EnsemblPlants:CDY49212	ProteinID:CDY49212
ProteinID:CDY49212.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00092583001	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF12	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661
MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EDD8BE
SEG:seg	:	:	:	:	:

Description

BnaCnng17010DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078IGW6]

Coordinates

chrLK032818:+:48649..51990

Molecular Weight (calculated)

56553.9 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.319

Length

509 amino acids

Sequence
(BLAST)

001: MSLALRRLSS SLKKPIFSNG GSFRSMSSTP ASERSRSTWI SQLNAPLEEI DPEIADIIEL EKARQWKGFE LIPSENFTSA SVMEAVGSVM TNKYSEGYPG
101: ARYYGGNEYI DMAESLCQKR ALEAFQLDPY KWGVNVQSLS GSPANFQVYT ALLKPHERIM ALDLPHGGHL SHGYQTDTKK ISAVSIFFET MPYRLDENTG
201: YIDYDQLEKS AVLFRPKLIV AGASAYARLY DYARIRKVCD KQKAVMLADM AHISGLVAAG VIPSPFEYAD VVTTTTHKSL RGPRGAMIFF RKGLKEVNKQ
301: GKEVMYDYED RINAAVFPGL QGGPHNHTIT GLAVALKQVK TPEYKAYQDQ VLRNCSKFAE TLLSKGYDLV SGGTENHLVL VNLKNKGIDG SRVEKVLESV
401: HIAANKNTVP GDVSAMVPGG IRMGTPALTS RGFIEEDFAK VAEYFDLAVK IALKIKAESQ GTKLKDFVAT MQSNEKLQSE MAKLREMVEE YAKQFPTIGF
501: EKDTMRYKE

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.