CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41499	Canola	cytosol	94.32	92.99
CDY04695	Canola	cytosol	87.74	84.16
CDY30643	Canola	cytosol	86.5	84.11
AT1G22020.1	Thale cress	cytosol	87.21	81.97
TraesCS3B01G417800.1	Wheat	cytosol	63.06	68.93
CDX91734	Canola	cytosol	71.23	68.08
CDY41886	Canola	cytosol	71.23	67.97
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.45	66.95
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	64.83	66.61
KRH64759	Soybean	cytosol, peroxisome	12.26	66.35
GSMUA_Achr6P17750_001	Banana	cytosol	64.83	63.81
TraesCS3A01G385600.1	Wheat	cytosol	65.72	63.25
TraesCS3D01G378700.1	Wheat	cytosol	65.36	63.12
HORVU3Hr1G082070.2	Barley	cytosol	65.36	62.69
Zm00001d012247_P001	Maize	cytosol	65.01	62.56
Os05t0429000-01	Rice	cytosol	65.01	62.35
Zm00001d042661_P001	Maize	cytosol	65.01	62.24
Os01t0874900-01	Rice	extracellular	66.25	62.17
CDY50421	Canola	cytosol	47.78	61.98
CDY01173	Canola	cytosol	47.78	61.98
CDY47310	Canola	cytosol	47.6	61.75
EES01843	Sorghum	cytosol	65.01	61.72
CDY69223	Canola	cytosol	51.51	61.57
GSMUA_Achr10P...	Banana	cytosol	61.28	60.0
KRH64758	Soybean	cytosol	52.22	59.04
CDX69344	Canola	mitochondrion	43.34	47.2
CDX75685	Canola	mitochondrion	43.34	47.2
CDY49212	Canola	mitochondrion	42.63	47.15
CDX90395	Canola	cytosol	29.31	47.14
CDY49684	Canola	mitochondrion	42.98	46.81
CDX96315	Canola	mitochondrion	42.63	46.69
CDY53135	Canola	cytosol	11.19	46.32
CDY47659	Canola	cytosol	11.19	46.32
GSMUA_Achr10P...	Banana	vacuole	13.85	45.88
CDX72795	Canola	mitochondrion	42.81	45.47
CDY39889	Canola	plastid	42.63	41.38
CDY23328	Canola	golgi, plasma membrane	42.45	38.55
CDX68316	Canola	mitochondrion	43.16	20.77

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:A0A078HLR4	UniProt:A0A078HLR4	EnsemblPlants:CDY38837
ProteinID:CDY38837	ProteinID:CDY38837.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00066667001	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7
MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1
MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193	UniPathway:UPA00288	UniParc:UPI0004EF1FAF	SEG:seg

Description

BnaC08g20110DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078HLR4]

Coordinates

chrLK032433:+:276723..278930

Molecular Weight (calculated)

62610.7 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.423

Length

563 amino acids

Sequence
(BLAST)

001: MDRAQSDLSL GFGSSHALPL PPPRIPIADD FDGPRSRRRA LVDKDEDFEE DDDDQREDFI LLGHPMKLKR SRPSSSTSSP TPPCKRSAID SSLEARRSLV
101: KAWGNQPLSE ADPDLHELMQ KEKQRQFRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQH IDQIETLCQE RALQAFGLRH DQWGVNVQPY
201: SCTSANFAVF AGLLSPGERI MGLDSPSGGH MSHGYYTPGG KKVSGASIFF ESFPYKVDPR TGYIDYEKLE EKALDYRPKI LICGGSSYPR DWEFPRFRFI
301: ADKCGAVLMF DMAQISGLVA AKEAPNPFEY CDIVTSTTHK SLRGPRGGII FYRRGFKAKK QSINLNHCES NAQYDFEEKI NFSVFPSLQG GPHNNHIAAL
401: AIALKQAASP EYKVYMRQVK KNAKALASAL ISRKCKLVTG GTDNHLLLWD LTPLGLTGKV YEKVCEMCHI TVNKVAIFSE NGVISPGGVR IGSPAMTSRG
501: CLEQDFETMA EFLYRAAQIA SAALREHGKL QKEPLKSIYH CKDIADLRNQ VEGFASKFAM PGI

Best Arabidopsis Sequence Match ( AT1G22020.2 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.