Factsheet for TraesCS3B01G417800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G385600.1	Wheat	cytosol	99.03	87.18
TraesCS3D01G378700.1	Wheat	cytosol	98.45	86.96
HORVU3Hr1G082070.2	Barley	cytosol	98.06	86.03
Zm00001d012247_P001	Maize	cytosol	91.26	80.34
Zm00001d042661_P001	Maize	cytosol	91.65	80.27
EES01843	Sorghum	cytosol	92.04	79.93
Os01t0874900-01	Rice	extracellular	90.87	78.0
KRH64759	Soybean	cytosol, peroxisome	14.37	71.15
KRH26369	Soybean	cytosol	75.53	69.09
KRH44066	Soybean	plastid	74.76	68.02
VIT_12s0034g02380.t01	Wine grape	cytosol	75.92	67.76
GSMUA_Achr6P17750_001	Banana	cytosol	73.4	66.08
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	69.13	64.96
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	73.4	64.73
GSMUA_Achr10P...	Banana	cytosol	70.87	63.48
PGSC0003DMT400061157	Potato	cytosol	73.01	63.3
TraesCS2B01G521700.1	Wheat	cytosol	57.67	63.06
CDY38837	Canola	cytosol	68.93	63.06
Solyc01g104000.2.1	Tomato	plastid	72.43	62.79
AT1G36370.1	Thale cress	plastid	72.23	62.21
Bra036774.1-P	Field mustard	cytosol	71.26	62.2
CDY41886	Canola	cytosol	71.07	62.03
CDX91734	Canola	cytosol	70.87	61.97
CDY41499	Canola	cytosol	68.54	61.82
Bra016392.1-P	Field mustard	cytosol	68.35	60.9
CDY30643	Canola	cytosol	67.96	60.45
Bra031358.1-P	Field mustard	cytosol	67.96	60.03
CDY04695	Canola	cytosol	67.77	59.45
AT1G22020.1	Thale cress	cytosol	68.16	58.6
TraesCS1B01G232200.2	Wheat	plastid	58.64	56.66
KRH64758	Soybean	cytosol	54.76	56.63
GSMUA_Achr10P...	Banana	vacuole	17.09	51.76
TraesCS4B01G069300.1	Wheat	mitochondrion	48.54	49.02

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR001680	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00678	PFscan:PS50082
PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	EnsemblPlantsGene:TraesCS3B01G417800	EnsemblPlants:TraesCS3B01G417800.1	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	TIGR:cd00378
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:654648169..654651767

Molecular Weight (calculated)

56616.5 Da

IEP (calculated)

8.221

GRAVY (calculated)

-0.335

Length

515 amino acids

Sequence
(BLAST)

001: MDLSRPGSSD LSLGLHPHAH ANAHARVHAR AMRPAKRHAS GADLEARRGA VRAWGNQPLA EADPDVHALM ERERERQVRG IELIASENFV CRAVLDALGS
101: HLTNKYSEGH PGARYYGGNQ HIDAIERLCH ERACTAFGLD PACWGVNVQP YSCTSANLAV YTGLLLPNDR IMGLEPPSGG HVSHGYYTPS GKKVSGASIF
201: FESLSYKVNP QTGYIDYDKL EDRAMDFHPK ILICGGSSYP REWDFARMRL IADKCGAVLM CDMAHISGLV AAKECRSPFD YCDVVTSTTH KNLRGPRGGI
301: IFFRKGKNMR KRGGSFSQGD ENDYDFEDKI NFAVFPSLQG GPHNNHIAAL AITLKQVATP EYKAYIQQVK KNAQALASAL LRRKCRLVTG GTDNHLVLWD
401: LRTFGLTGKN FEKVCELCHI SINKTPIYGD NGSISPGGVR IGTPAMTTRG CLEDDFEVIA DFLIRATQIA GSVLKQHGKV QKEFLRGLEN NKDIIELGNQ
501: VEAFASQFAM PGFDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.