Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91734 | Canola | cytosol | 90.13 | 91.51 |
| Bra036774.1-P | Field mustard | cytosol | 89.63 | 90.85 |
| CDY41886 | Canola | cytosol | 89.46 | 90.68 |
| TraesCS3B01G417800.1 | Wheat | cytosol | 62.21 | 72.23 |
| AT1G22020.1 | Thale cress | cytosol | 72.07 | 71.95 |
| KRH64759 | Soybean | cytosol, peroxisome | 12.37 | 71.15 |
| VIT_18s0001g04340.t01 | Wine grape | cytosol, nucleus, plastid | 69.4 | 71.06 |
| KRH53150 | Soybean | cytosol, nucleus, peroxisome, plastid | 63.38 | 69.16 |
| GSMUA_Achr6P17750_001 | Banana | cytosol | 66.05 | 69.06 |
| TraesCS3D01G378700.1 | Wheat | cytosol | 65.55 | 67.24 |
| TraesCS3A01G385600.1 | Wheat | cytosol | 65.55 | 67.01 |
| HORVU3Hr1G082070.2 | Barley | cytosol | 64.88 | 66.1 |
| GSMUA_Achr10P... | Banana | cytosol | 63.21 | 65.74 |
| Zm00001d012247_P001 | Maize | cytosol | 63.21 | 64.62 |
| Zm00001d042661_P001 | Maize | cytosol | 63.04 | 64.12 |
| Os01t0874900-01 | Rice | extracellular | 64.21 | 64.0 |
| EES01843 | Sorghum | cytosol | 63.04 | 63.58 |
| Os05t0429000-01 | Rice | cytosol | 61.37 | 62.52 |
| AT4G13930.1 | Thale cress | cytosol | 48.83 | 62.0 |
| KRH64758 | Soybean | cytosol | 50.17 | 60.24 |
| AT4G13890.1 | Thale cress | cytosol | 46.82 | 59.57 |
| GSMUA_Achr10P... | Banana | vacuole | 14.05 | 49.41 |
| AT4G37930.1 | Thale cress | mitochondrion | 42.14 | 48.74 |
| AT4G32520.1 | Thale cress | plastid | 41.64 | 47.07 |
| AT5G26780.3 | Thale cress | mitochondrion | 40.8 | 45.78 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
| Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | MapMan:4.1.4.3.1 | EntrezGene:840543 | UniProt:A0A178WMF6 | ProteinID:AAG52195.1 |
| ProteinID:AEE31862.1 | ArrayExpress:AT1G36370 | EnsemblPlantsGene:AT1G36370 | RefSeq:AT1G36370 | TAIR:AT1G36370 | RefSeq:AT1G36370-TAIR-G |
| EnsemblPlants:AT1G36370.1 | TAIR:AT1G36370.1 | EMBL:AY084945 | EMBL:BT002738 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004372 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030170 |
| GO:GO:0035999 | GO:GO:0044030 | GO:GO:0046500 | GO:GO:0046686 | GO:GO:0055063 | InterPro:IPR015421 |
| InterPro:IPR015422 | HAMAP:MF_00051 | RefSeq:NP_564473.1 | ProteinID:OAP19468.1 | PFAM:PF00464 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00096 | PFscan:PS51257 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF7 |
| InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | UniProt:Q84WV0 | Symbol:SHM7 | SUPFAM:SSF53383 |
| InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI000000BD95 | SEG:seg | : | : |
Description
SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
Coordinates
chr1:-:13696042..13698739
Molecular Weight (calculated)
66297.3 Da
IEP (calculated)
7.895
GRAVY (calculated)
-0.412
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.