Factsheet for Os01t0874900-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G417800.1	Wheat	cytosol	78.0	90.87
TraesCS3D01G378700.1	Wheat	cytosol	87.5	90.05
TraesCS3A01G385600.1	Wheat	cytosol	87.33	89.57
HORVU3Hr1G082070.2	Barley	cytosol	87.5	89.44
Zm00001d042661_P001	Maize	cytosol	86.17	87.93
Zm00001d012247_P001	Maize	cytosol	85.67	87.86
EES01843	Sorghum	cytosol	86.67	87.69
KRH64759	Soybean	cytosol, peroxisome	13.0	75.0
Os05t0429000-01	Rice	cytosol	72.0	73.59
KRH26369	Soybean	cytosol	68.5	73.0
KRH44066	Soybean	plastid	67.67	71.73
VIT_12s0034g02380.t01	Wine grape	cytosol	68.33	71.06
GSMUA_Achr6P17750_001	Banana	cytosol	66.33	69.58
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	67.17	69.01
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	61.33	67.15
Solyc01g104000.2.1	Tomato	plastid	66.0	66.67
PGSC0003DMT400061157	Potato	cytosol	66.0	66.67
GSMUA_Achr10P...	Banana	cytosol	63.5	66.26
CDY38837	Canola	cytosol	62.17	66.25
CDY41499	Canola	cytosol	62.17	65.32
CDX91734	Canola	cytosol	63.83	65.03
CDY41886	Canola	cytosol	63.83	64.92
Bra036774.1-P	Field mustard	cytosol	63.83	64.92
Bra016392.1-P	Field mustard	cytosol	62.5	64.88
AT1G36370.1	Thale cress	plastid	64.0	64.21
CDY30643	Canola	cytosol	61.67	63.9
Bra031358.1-P	Field mustard	cytosol	61.83	63.64
CDY04695	Canola	cytosol	61.5	62.86
AT1G22020.1	Thale cress	cytosol	62.33	62.44
Os11t0455800-01	Rice	plasma membrane	48.5	61.78
Os12t0409000-01	Rice	plasma membrane	50.83	57.44
KRH64758	Soybean	cytosol	47.67	57.43
GSMUA_Achr10P...	Banana	vacuole	14.83	52.35
Os03t0738400-01	Rice	mitochondrion	40.83	47.76

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:4324773	EMBL:AK103554	ProteinID:BAB86225.1
ProteinID:BAB92441.1	ProteinID:BAF06874.1	ProteinID:BAS75492.1	ProteinID:EAZ14341.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004372	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999
InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	EnsemblPlantsGene:Os01g0874900	EnsemblPlants:Os01t0874900-01	PFAM:PF00464
ScanProsite:PS00678	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
UniProt:Q8RYY6	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	UniParc:UPI00000A447C	InterPro:WD40_repeat_CS	RefSeq:XP_015621739.1
SEG:seg	:	:	:	:	:

Description

serine hydroxymethyltransferase 4Similar to Hydroxymethyltransferase. (Os01t0874900-01)

Coordinates

chr1:+:37962564..37966769

Molecular Weight (calculated)

64797.8 Da

IEP (calculated)

7.172

GRAVY (calculated)

-0.376

Length

600 amino acids

Sequence
(BLAST)

001: MDLSRPESSD LSLGFHSLGH ARGHAVTGPL RLFDDMEDAK PEKSVGGGGG GGGGGGEEED GEEGGDQHFS LLGHALCVKR PRRALYGGGG GGGAGGGGGG
101: GGEASSCSSS SSSLHPAKRQ ATAERGADLE ARRGAVRAWG NQALAEADPD VHALMELERD RQVRGIELIA SENFVCRAVL EALGSHLTNK YSEGHPGARY
201: YGGNQHIDGI ERLCHERALA AFGLDPACWG VNVQPYSCTS ANLAVYTGLL LPKDRIMGLE PPSGGHVSHG YYTPSGKKVS GASIFFESLS YKVNPQTGYI
301: DYDKLEERAM DFHPKILICG GSSYPREWDF ARMRLIADKC GAVLMCDMAH ISGLVAAKEC RSPFDYCDVV TSTTHKNLRG PRGGIIFFRR GKNLRRRTGS
401: FSQADENDYD FEDRINFAVF PSMQGGPHNN HIAALAITLK QVATPEYKAY IIQVKKNAQA LASALLRRKC RLVTGGTDNH LVLWDLRNLG LTGKNFEKVC
501: EACHISINKM PIYGDNGSIS PGGVRIGTPA MTTRGCLEDD FEVIADFLIR ATQIASNLMK EHGKMQKEFL RGLQNNKDII ELRNQVENFA SQFAMPGFDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.