CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64759	Soybean	cytosol, peroxisome	18.61	98.08
KRH64758	Soybean	cytosol	73.36	80.72
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	73.91	69.35
TraesCS3B01G417800.1	Wheat	cytosol	64.96	69.13
KRH26369	Soybean	cytosol	70.26	68.38
KRH44066	Soybean	plastid	69.89	67.67
CDY38837	Canola	cytosol	66.61	64.83
CDY30643	Canola	cytosol	68.25	64.59
CDY41499	Canola	cytosol	67.15	64.45
GSMUA_Achr6P17750_001	Banana	cytosol	66.97	64.16
Bra031358.1-P	Field mustard	cytosol	68.25	64.15
CDY41886	Canola	cytosol	68.61	63.73
Bra036774.1-P	Field mustard	cytosol	68.61	63.73
CDY04695	Canola	cytosol	68.25	63.71
CDX91734	Canola	cytosol	68.43	63.67
Bra016392.1-P	Field mustard	cytosol	66.97	63.49
AT1G36370.1	Thale cress	plastid	69.16	63.38
TraesCS3D01G378700.1	Wheat	cytosol	66.61	62.61
TraesCS3A01G385600.1	Wheat	cytosol	66.61	62.39
HORVU3Hr1G082070.2	Barley	cytosol	66.42	62.01
Zm00001d012247_P001	Maize	cytosol	66.06	61.88
Os05t0429000-01	Rice	cytosol	66.24	61.84
AT1G22020.1	Thale cress	cytosol	67.34	61.6
EES01843	Sorghum	cytosol	66.42	61.38
Os01t0874900-01	Rice	extracellular	67.15	61.33
Zm00001d042661_P001	Maize	cytosol	65.69	61.22
GSMUA_Achr10P...	Banana	cytosol	64.23	61.22
KRH58850	Soybean	cytosol	53.1	60.75
KRH18830	Soybean	cytosol, peroxisome, plastid	12.77	54.26
KRH42751	Soybean	endoplasmic reticulum, nucleus	56.02	53.67
KRH07754	Soybean	cytosol, nucleus, peroxisome	20.07	50.93
KRH26204	Soybean	cytosol	18.25	50.25
KRH11116	Soybean	cytosol	21.9	49.18
KRH45493	Soybean	mitochondrion	46.17	48.84
KRH72501	Soybean	mitochondrion	45.8	48.83
GSMUA_Achr10P...	Banana	vacuole	15.15	48.82
KRH16896	Soybean	mitochondrion	45.07	48.72
KRG99502	Soybean	mitochondrion	45.62	48.26
KRH39500	Soybean	mitochondrion	44.89	47.58
KRH21130	Soybean	plastid	44.53	45.52
KRH11117	Soybean	plastid	18.25	44.05

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100776419	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EMBL:ACUP02003451	EnsemblPlantsGene:GLYMA_06G107800
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
UniProt:K7KUF0	EnsemblPlants:KRH53150	ProteinID:KRH53150	ProteinID:KRH53150.1	HAMAP:MF_00051	PFAM:PF00464
ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF27	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161
MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI000233A900
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:8663690..8668262

Molecular Weight (calculated)

61247.8 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.406

Length

548 amino acids

Sequence
(BLAST)

001: MDSQPGLSLG LSATLSSPAA PLSDTTSVPW RLFNERHPKK EEQQEEEKED EDGGETINFM DQRVKRKIEG HQQQPCFPSK RVAVDSSVGW WNQPLGVADP
101: EIFDIMQKEK RRQFKGIELI ASENFVCRAV MEALGSHLSN KYSEGMPGAK YYTGNQYIDE IEFLCCQRAL LAFDLHPNNW GVNVQPYSCT SANFAVYTGI
201: LHPGDRIMGL DSPSGGHLSH GYYTLGGKKV SAASIFFETL PYKVNPQSGY IDYDKLEEKA MDFRPKILIC GGSSYPREWD YARFRQAADK CGAVLMCDMA
301: HISGLVAAKE VASPFDYCDI VTSTTHKSLR GPRGGIIFYR RGIKLRKQGF VHNHGDDSNY DFEEKINFAL YPSLQGGPHN NHIAALAIAL KQVATPEYKA
401: YMQQVKRNAQ ALASALLRRN FKLVTDGTDN HLLLWDLTAL GLIDRNYEKV CEACHITLNK CAIYGSISPG GVRIGTPAMT SRGCLEEDFE TIADFLLRAA
501: QITSIVQREH GKSCKDFLKG LQNNKDISEL RNRVETFSSQ FAMPGFDI

Best Arabidopsis Sequence Match ( AT1G22020.1 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.