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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 10
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 nucleus: 21132161
mitochondrion: 27780359
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG99502 Soybean mitochondrion 98.07 98.07
PGSC0003DMT400078666 Potato mitochondrion 91.31 91.31
Solyc02g091560.2.1 Tomato plastid 91.31 91.31
Os03t0738400-01 Rice mitochondrion 86.68 87.52
KRH39500 Soybean mitochondrion 85.91 86.07
OQU91027 Sorghum mitochondrion 85.14 85.96
TraesCS4D01G068100.1 Wheat mitochondrion 84.36 85.69
TraesCS4B01G069300.1 Wheat mitochondrion 84.36 85.69
TraesCS4A01G246100.1 Wheat mitochondrion 84.36 85.69
KRH16896 Soybean mitochondrion 83.01 84.81
KRH72501 Soybean mitochondrion 83.98 84.63
HORVU4Hr1G011500.1 Barley plasma membrane 84.56 82.18
KRH26204 Soybean cytosol 22.2 57.79
KRH07754 Soybean cytosol, nucleus, peroxisome 23.94 57.41
KRH11116 Soybean cytosol 26.64 56.56
KRH58850 Soybean cytosol 51.93 56.16
KRH21130 Soybean plastid 55.79 53.92
KRH11117 Soybean plastid 22.39 51.1
Zm00001d009738_P001 Maize cytosol, plastid 21.04 50.23
KRH42751 Soybean endoplasmic reticulum, nucleus 53.28 48.25
KRH53150 Soybean cytosol, nucleus, peroxisome, plastid 48.84 46.17
KRH26369 Soybean cytosol 49.61 45.65
KRH44066 Soybean plastid 49.81 45.58
KRH64759 Soybean cytosol, peroxisome 8.49 42.31
KRH64758 Soybean cytosol 40.15 41.77
KRH18830 Soybean cytosol, peroxisome, plastid 8.69 34.88
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
EntrezGene:100499634Gene3D:3.40.640.10Gene3D:3.90.1150.10UniProt:A0A0R4J3Y9EMBL:ACUP02005235EnsemblPlantsGene:GLYMA_08G274400
GO:GO:0003674GO:GO:0003824GO:GO:0004372GO:GO:0005488GO:GO:0006545GO:GO:0006730
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0019264
GO:GO:0030170GO:GO:0035999InterPro:IPR015421InterPro:IPR015422EnsemblPlants:KRH45493ProteinID:KRH45493
ProteinID:KRH45493.1HAMAP:MF_00051PFAM:PF00464PIRSF:PIRSF000412ScanProsite:PS00096PANTHER:PTHR11680
PANTHER:PTHR11680:SF29MetaCyc:PWY-1622MetaCyc:PWY-181MetaCyc:PWY-2161MetaCyc:PWY-2201MetaCyc:PWY-3661
MetaCyc:PWY-3661-1MetaCyc:PWY-3841MetaCyc:PWY-5497InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI0000F6CAC6::
Description
hypothetical protein
Coordinates
chr8:-:36278968..36285240
Molecular Weight (calculated)
57358.8 Da
IEP (calculated)
8.902
GRAVY (calculated)
-0.282
Length
518 amino acids
Sequence
(BLAST)
001: MAMAMALRRL SSSIDKPLRP LFNAGSLYYK SSLPDEAVYD KERPGVTWPK QLNAPLEVVD PEIADIIELE KARQWKGLEL IPSENFTSVS VMQAVGSVMT
101: NKYSEGYPGA RYYGGNEYID MAETLCQKRA LEAFRLDPAK WGVNVQPLSG SPANFHVYTA LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLNESTGY IDYDQMEKSA TLFRPKLIVA GASAYARLYD YERVRKVCDK QKAILLADMA HISGLVAAGV IPSPFDYADV VTTTTHKSLR GPRGAMIFYR
301: KGVKEINKQG KEVLYDYEDK INQAVFPGLQ GGPHNHTITG LAVALKQATT PEYRAYQEQV LSNSFKFAQA LSERSYELVS GGTENHLVLV NLKNKGIDGS
401: RVEKVLEAVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFVEEDFVKV AEFFDAAVKI AVKIKGESKG TKLKDFLATI ESSSTFQSEI AKLRLDVEEY
501: AKQFPTIGFD KATMKHKN
Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.