Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 10
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plasma membrane:
18260611
mitochondrion: 19010998 nucleus: 19621931 mitochondrion: 23027867 extracellular: 23159799 mitochondrion: 23356873 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
23027867
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
19010998
doi
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID:
23356873
doi
ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os08t0478500-01 | |
Os09t0464400-00 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G37930.1 | Os08t0478500-01 | AT4G24560.1 | 23232097 |
AT4G37930.1 | Os09t0464400-00 | AT4G24560.1 | 23232097 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
OQU91027 | Sorghum | mitochondrion | 94.74 | 94.74 |
TraesCS4A01G246100.1 | Wheat | mitochondrion | 93.18 | 93.73 |
TraesCS4B01G069300.1 | Wheat | mitochondrion | 93.18 | 93.73 |
TraesCS4D01G068100.1 | Wheat | mitochondrion | 93.18 | 93.73 |
HORVU4Hr1G011500.1 | Barley | plasma membrane | 92.98 | 89.49 |
CDX90395 | Canola | cytosol | 60.82 | 89.14 |
PGSC0003DMT400078666 | Potato | mitochondrion | 89.08 | 88.22 |
Solyc02g091560.2.1 | Tomato | plastid | 88.89 | 88.03 |
CDX69344 | Canola | mitochondrion | 88.3 | 87.62 |
KRG99502 | Soybean | mitochondrion | 88.11 | 87.26 |
CDX75685 | Canola | mitochondrion | 87.91 | 87.23 |
CDY49684 | Canola | mitochondrion | 87.72 | 87.04 |
Bra011796.1-P | Field mustard | mitochondrion | 87.72 | 87.04 |
GSMUA_Achr7P27360_001 | Banana | mitochondrion | 87.13 | 86.97 |
AT4G37930.1 | Thale cress | mitochondrion | 87.52 | 86.85 |
KRH45493 | Soybean | mitochondrion | 87.52 | 86.68 |
Bra010622.1-P | Field mustard | mitochondrion | 87.33 | 86.65 |
VIT_00s0211g00120.t01 | Wine grape | mitochondrion | 86.35 | 85.52 |
VIT_18s0001g07960.t01 | Wine grape | mitochondrion | 85.58 | 85.08 |
GSMUA_Achr6P23140_001 | Banana | mitochondrion | 85.96 | 84.81 |
Solyc04g076790.2.1 | Tomato | nucleus | 84.99 | 84.33 |
PGSC0003DMT400016362 | Potato | mitochondrion | 85.19 | 84.2 |
VIT_00s0211g00070.t01 | Wine grape | mitochondrion | 83.82 | 83.01 |
KRH72501 | Soybean | mitochondrion | 83.04 | 82.88 |
KRH16896 | Soybean | mitochondrion | 81.87 | 82.84 |
GSMUA_Achr3P30760_001 | Banana | mitochondrion | 84.41 | 82.63 |
VIT_00s0211g00090.t01 | Wine grape | cytosol | 41.52 | 81.92 |
KRH39500 | Soybean | mitochondrion | 81.29 | 80.66 |
VIT_00s0211g00100.t01 | Wine grape | mitochondrion | 38.79 | 80.24 |
Os11t0455800-01 | Rice | plasma membrane | 52.24 | 56.9 |
Os12t0409000-01 | Rice | plasma membrane | 53.8 | 51.98 |
Zm00001d009738_P001 | Maize | cytosol, plastid | 21.64 | 51.15 |
Os05t0429000-01 | Rice | cytosol | 48.15 | 42.08 |
Os01t0874900-01 | Rice | extracellular | 47.76 | 40.83 |
Protein Annotations
Description
serine hydroxymethyltransferase 1, chlorophyll-deficient mutant 1Similar to Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT). (Os03t0738400-01);Similar to Serine hydroxymethyltransferase. (Os03t0738400-02);Similar to Serine hydroxymethyltransferase. (Os03t0738400-03)
Coordinates
chr3:+:30299613..30304241
Molecular Weight (calculated)
56418.7 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.270
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATALRKL SSDALRRQPL SRITPLYYMA SLPATEERSG VTWPKQLNAP LEEVDPEIAD IIEHEKARQW KGLELIPSEN FTSVSVMQAV GSVMTNKYSE
101: GYPGARYYGG NEYIDMAESL CQKRALEAFR LDPAKWGVNV QPLSGSPANF HVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI FFETMPYRLD
201: ESTGLIDYDQ MEKSAVLFRP KLIVAGASAY ARLYDYDRMR KVCDKQKAIL LADMAHISGL VAAGVVPSPF DYADVVTTTT HKSLRGPRGA MIFYRKGVKG
301: VNKQGKEVMY DFEDKINAAV FPGLQGGPHN HTITGLAVAL KQATTPEYRA YQEQVMSNCA KFAQSLTAKG YELVSGGTDN HLVLVNLKSK GIDGSRVEKV
401: LENVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVADFFD AAVNLALKVK AAAGGTKLKD FVATLQSDSN IQSEIAKLRH DVEEYAKQFP
501: TIGFEKETMK YKN
101: GYPGARYYGG NEYIDMAESL CQKRALEAFR LDPAKWGVNV QPLSGSPANF HVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI FFETMPYRLD
201: ESTGLIDYDQ MEKSAVLFRP KLIVAGASAY ARLYDYDRMR KVCDKQKAIL LADMAHISGL VAAGVVPSPF DYADVVTTTT HKSLRGPRGA MIFYRKGVKG
301: VNKQGKEVMY DFEDKINAAV FPGLQGGPHN HTITGLAVAL KQATTPEYRA YQEQVMSNCA KFAQSLTAKG YELVSGGTDN HLVLVNLKSK GIDGSRVEKV
401: LENVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVADFFD AAVNLALKVK AAAGGTKLKD FVATLQSDSN IQSEIAKLRH DVEEYAKQFP
501: TIGFEKETMK YKN
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.