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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 10
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plasma membrane: 18260611
mitochondrion: 19010998
nucleus: 19621931
mitochondrion: 23027867
extracellular: 23159799
mitochondrion: 23356873
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 23356873 doi
S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar
ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU91027 Sorghum mitochondrion 94.74 94.74
TraesCS4A01G246100.1 Wheat mitochondrion 93.18 93.73
TraesCS4B01G069300.1 Wheat mitochondrion 93.18 93.73
TraesCS4D01G068100.1 Wheat mitochondrion 93.18 93.73
HORVU4Hr1G011500.1 Barley plasma membrane 92.98 89.49
CDX90395 Canola cytosol 60.82 89.14
PGSC0003DMT400078666 Potato mitochondrion 89.08 88.22
Solyc02g091560.2.1 Tomato plastid 88.89 88.03
CDX69344 Canola mitochondrion 88.3 87.62
KRG99502 Soybean mitochondrion 88.11 87.26
CDX75685 Canola mitochondrion 87.91 87.23
CDY49684 Canola mitochondrion 87.72 87.04
Bra011796.1-P Field mustard mitochondrion 87.72 87.04
GSMUA_Achr7P27360_001 Banana mitochondrion 87.13 86.97
AT4G37930.1 Thale cress mitochondrion 87.52 86.85
KRH45493 Soybean mitochondrion 87.52 86.68
Bra010622.1-P Field mustard mitochondrion 87.33 86.65
VIT_00s0211g00120.t01 Wine grape mitochondrion 86.35 85.52
VIT_18s0001g07960.t01 Wine grape mitochondrion 85.58 85.08
GSMUA_Achr6P23140_001 Banana mitochondrion 85.96 84.81
Solyc04g076790.2.1 Tomato nucleus 84.99 84.33
PGSC0003DMT400016362 Potato mitochondrion 85.19 84.2
VIT_00s0211g00070.t01 Wine grape mitochondrion 83.82 83.01
KRH72501 Soybean mitochondrion 83.04 82.88
KRH16896 Soybean mitochondrion 81.87 82.84
GSMUA_Achr3P30760_001 Banana mitochondrion 84.41 82.63
VIT_00s0211g00090.t01 Wine grape cytosol 41.52 81.92
KRH39500 Soybean mitochondrion 81.29 80.66
VIT_00s0211g00100.t01 Wine grape mitochondrion 38.79 80.24
Os11t0455800-01 Rice plasma membrane 52.24 56.9
Os12t0409000-01 Rice plasma membrane 53.8 51.98
Zm00001d009738_P001 Maize cytosol, plastid 21.64 51.15
Os05t0429000-01 Rice cytosol 48.15 42.08
Os01t0874900-01 Rice extracellular 47.76 40.83
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10EntrezGene:4334048ProteinID:ABF98772.1ProteinID:BAF13125.1ProteinID:BAS86288.1
ProteinID:BAS86290.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0004372
GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005840GO:GO:0005886GO:GO:0006544
GO:GO:0006563GO:GO:0006730GO:GO:0006950GO:GO:0007623GO:GO:0008150GO:GO:0008152
GO:GO:0008168GO:GO:0008266GO:GO:0009058GO:GO:0009409GO:GO:0009416GO:GO:0009507
GO:GO:0009534GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009853
GO:GO:0009987GO:GO:0010319GO:GO:0016020GO:GO:0016740GO:GO:0019264GO:GO:0022626
GO:GO:0030170GO:GO:0032259GO:GO:0035999GO:GO:0046686GO:GO:0048046InterPro:IPR015421
InterPro:IPR015422EMBL:JN944370HAMAP:MF_00051EnsemblPlantsGene:Os03g0738400EnsemblPlants:Os03t0738400-01PFAM:PF00464
PIRSF:PIRSF000412ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF26InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_majorUniProt:Q10D68SUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI0000DB474C
RefSeq:XP_015629811.1SEG:seg::::
Description
serine hydroxymethyltransferase 1, chlorophyll-deficient mutant 1Similar to Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT). (Os03t0738400-01);Similar to Serine hydroxymethyltransferase. (Os03t0738400-02);Similar to Serine hydroxymethyltransferase. (Os03t0738400-03)
Coordinates
chr3:+:30299613..30304241
Molecular Weight (calculated)
56418.7 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.270
Length
513 amino acids
Sequence
(BLAST)
001: MAMATALRKL SSDALRRQPL SRITPLYYMA SLPATEERSG VTWPKQLNAP LEEVDPEIAD IIEHEKARQW KGLELIPSEN FTSVSVMQAV GSVMTNKYSE
101: GYPGARYYGG NEYIDMAESL CQKRALEAFR LDPAKWGVNV QPLSGSPANF HVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI FFETMPYRLD
201: ESTGLIDYDQ MEKSAVLFRP KLIVAGASAY ARLYDYDRMR KVCDKQKAIL LADMAHISGL VAAGVVPSPF DYADVVTTTT HKSLRGPRGA MIFYRKGVKG
301: VNKQGKEVMY DFEDKINAAV FPGLQGGPHN HTITGLAVAL KQATTPEYRA YQEQVMSNCA KFAQSLTAKG YELVSGGTDN HLVLVNLKSK GIDGSRVEKV
401: LENVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVADFFD AAVNLALKVK AAAGGTKLKD FVATLQSDSN IQSEIAKLRH DVEEYAKQFP
501: TIGFEKETMK YKN
Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.