Factsheet for Bra010622.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013814.1-P
Bra019219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37930.1	Bra013814.1-P	AT4G24560.1	23232097
AT4G37930.1	Bra019219.1-P	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90395	Canola	cytosol	67.12	99.14
CDY49684	Canola	mitochondrion	99.03	99.03
AT4G37930.1	Thale cress	mitochondrion	97.87	97.87
Bra011796.1-P	Field mustard	mitochondrion	97.29	97.29
Os03t0738400-01	Rice	mitochondrion	86.65	87.33
TraesCS4D01G068100.1	Wheat	mitochondrion	85.49	86.67
TraesCS4B01G069300.1	Wheat	mitochondrion	85.49	86.67
TraesCS4A01G246100.1	Wheat	mitochondrion	85.49	86.67
OQU91027	Sorghum	mitochondrion	84.72	85.38
HORVU4Hr1G011500.1	Barley	plasma membrane	85.69	83.11
Bra016147.1-P	Field mustard	mitochondrion	83.37	82.41
Bra032749.1-P	Field mustard	cytosol	53.97	59.24
Bra014001.1-P	Field mustard	cytosol	48.94	58.29
Bra040080.1-P	Field mustard	plastid	53.77	52.55
Zm00001d009738_P001	Maize	cytosol, plastid	20.89	49.77
Bra022129.1-P	Field mustard	cytosol	12.96	47.18
Bra031358.1-P	Field mustard	cytosol	48.94	43.4
Bra016392.1-P	Field mustard	cytosol	47.39	42.39
Bra036774.1-P	Field mustard	cytosol	47.78	41.86
Bra003928.1-P	Field mustard	mitochondrion	78.92	36.66

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EnsemblPlantsGene:Bra010622	EnsemblPlants:Bra010622.1	EnsemblPlants:Bra010622.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4D2C2	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI00025463C9	:

Description

AT4G37930 (E=4e-295) SHM1, STM, SHMT1 | SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) binding

Coordinates

chrA08:-:15620296..15623121

Molecular Weight (calculated)

57326.8 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.327

Length

517 amino acids

Sequence
(BLAST)

001: MAMAMALRRL SSSVDKPIRP LIRSTTCYMS SLPSEAVDEK ERSRVTWPKQ LNASLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFDYADVV TTTTHKSLRG PRGAMIFYRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MEKGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVMQAVHI ASNENTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTLA LKVKSEAQGT KLKDFVSAME ASSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.