Factsheet for Bra019219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010622.1-P
Bra011796.1-P
Bra014001.1-P
Bra032749.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	Bra014001.1-P	AT4G13930.1	23232097
AT4G24560.1	Bra032749.1-P	AT4G13930.1	23232097
AT4G24560.1	Bra010622.1-P	AT4G37930.1	23232097
AT4G24560.1	Bra011796.1-P	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11021	Canola	golgi	96.25	96.53
Bra013814.1-P	Field mustard	golgi	80.43	79.8
AT4G24560.1	Thale cress	extracellular, golgi	77.57	77.88
KRH72452	Soybean	golgi, plasma membrane	42.19	41.22
KRH16837	Soybean	golgi	42.29	40.96
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	15.51	40.67
KRH52893	Soybean	extracellular, golgi, vacuole	35.08	39.98
GSMUA_Achr10P...	Banana	golgi	17.69	39.78
KRH62182	Soybean	golgi, vacuole	43.97	39.1
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	47.04	38.86
Bra024386.1-P	Field mustard	golgi	29.25	38.59
GSMUA_Achr5P22990_001	Banana	vacuole	33.99	38.26
GSMUA_Achr10P...	Banana	nucleus	14.53	36.21
Bra011290.1-P	Field mustard	vacuole	21.54	35.62
Bra007837.1-P	Field mustard	nucleus	17.59	34.9
GSMUA_Achr7P19010_001	Banana	nucleus	15.81	34.78
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	25.3	34.74
Zm00001d050489_P001	Maize	nucleus	15.61	34.57
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	21.34	34.23
GSMUA_AchrUn_...	Banana	golgi, vacuole	32.81	32.77
Os08t0478500-01	Rice	plastid	31.32	32.41
OQU80649	Sorghum	nucleus	25.1	31.51
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	28.06	31.38
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.66	31.25
TraesCS5B01G243400.1	Wheat	vacuole	28.06	31.0
TraesCS7A01G282200.4	Wheat	plastid	29.94	30.64
TraesCS7B01G179000.2	Wheat	plastid	29.94	30.51
TraesCS7D01G280800.4	Wheat	plastid	29.64	30.24
Zm00001d020769_P005	Maize	nucleus	24.8	29.32
TraesCS5A01G246000.3	Wheat	vacuole	27.87	29.31
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	25.3	29.19
OQU89635	Sorghum	vacuole	26.09	28.95
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	25.3	28.7
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	26.78	27.29
Bra038533.1-P	Field mustard	nucleus	9.49	27.04
Bra010647.1-P	Field mustard	nucleus	9.29	25.27
Bra024037.1-P	Field mustard	cytosol	9.39	23.75
Bra028566.1-P	Field mustard	cytosol	10.87	21.83
Bra011823.1-P	Field mustard	nucleus	9.19	21.09
Bra027341.1-P	Field mustard	mitochondrion	13.44	19.8
Bra021031.1-P	Field mustard	nucleus	12.35	19.47
Bra010268.1-P	Field mustard	cytosol	10.87	19.33
Bra022060.1-P	Field mustard	nucleus	12.55	19.1
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	10.97	18.81
Bra025000.1-P	Field mustard	endoplasmic reticulum	12.45	17.28
Bra006790.1-P	Field mustard	nucleus, plastid	13.83	16.85
Bra020400.1-P	Field mustard	nucleus	13.54	16.45
Bra002683.1-P	Field mustard	nucleus	14.23	14.66

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra019219	EnsemblPlants:Bra019219.1	EnsemblPlants:Bra019219.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	UniProt:M4DRS6
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix
UniParc:UPI0002540FDA	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:

Description

AT4G24560 (E=0.0) UBP16 | UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding

Coordinates

chrA03:-:25632722..25637143

Molecular Weight (calculated)

110987.0 Da

IEP (calculated)

7.016

GRAVY (calculated)

-0.490

Length

1012 amino acids

Sequence
(BLAST)

0001: MLLVLDLGLS SLFLLISLVL PVVAFVVRRK WRLAALRREE IRRLLIHASE EAARAELESS VEFSSVYVPN SFQCPVCYSP ASTRCSRCKA VRYCSGKCQI
0101: IHWRQGHRDE CHPASVLYNT DDEKSDCDLK FREGNEGLTP DETLLLHTEQ VTTNVQVREA ILSNPVISPE DGGGESADNK DELMDKEEAV SVAETSGSSF
0201: SGFSSSPRND SGDDDDISFC ESSSSSDSEI SEPPRDDHVS VESEETFFSN IDDVKSKPLS PKFVQLVESA NDLASLPKLS LNKPGGDPGQ NPSESSSLVS
0301: SVGTDGHPRS ADPSLLKSSD FWGTALGSVE RVSENCDGSK SGKSSLNLSF GSSRDISAAK ISEPRNNNLK ETTRAGLGTR NFSGEVNSRE RIAKRFDEAE
0401: ISLPRSSSLD VPSPLNPTVL STVTLQKSKS TSAGSGFMLA PMKVGEVQRL SSKASDTREC ADAMKHSALG AKSGRVLDHQ KQNGLDVHRI NSLNGRSGMK
0501: ASVLKAVDQW TRPKSLAENE IAGNHSHKGL FSYELFSKLY TSKIEFQPCG LINCGNSCFA NVVFQCLMFT APLTTYFLQQ LHSRTCPNKE QCFTCGFEKL
0601: VLMAKEGKSS LSPSGLLSQL QSIGIRLGNG KQEDAHEFLR FVVDTMQSVC IKASGCDMPK TKKLEDTTLI GLTFGGYLRS KIKCMKCQEK SERREKMMDL
0701: TVEIDGDIST LEEALHRFTR TEILDGENKY KCGSCKSYER AKKKLKITEP PNVLTIALKR FQSGKFGKLN KLVRFPETLD LTPYVSGGSE KSHDYKLYGV
0801: IVHLDTMNAA FSGHYVCYVR NSQNKWYKAD DSTVVTSDVE SVWTKGAYML FYARCSPTPP RLVLCNKSEA SNKKSSVPVV PKATVSTASP VLSSNTPGGD
0901: RPGNIQSFYS SFQRLQRILE EDSSSDSSSL FDSTSDECSC STDSTSMDDF ADFIFGDNQG RAHGQSEAPS PTSSSSSSSP PFTRHSRLGD LSRSCQETCR
1001: NSRHRVSLGR ER

Best Arabidopsis Sequence Match ( AT4G24560.1 )
(BLAST)

0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER

Arabidopsis Description

UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.