Factsheet for Bra028566.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85744	Canola	cytosol	99.6	86.25
AT5G10790.1	Thale cress	cytosol	83.93	75.94
PGSC0003DMT400038315	Potato	nucleus	51.59	58.04
GSMUA_Achr7P05330_001	Banana	cytosol	35.71	56.43
VIT_04s0008g06860.t01	Wine grape	nucleus	59.13	53.89
PGSC0003DMT400086994	Potato	cytosol	14.09	53.38
Solyc08g068810.2.1	Tomato	cytosol	56.35	51.73
KRH15753	Soybean	nucleus	54.17	49.28
KRH05289	Soybean	nucleus	54.17	49.19
Bra038533.1-P	Field mustard	nucleus	16.87	23.94
Bra010647.1-P	Field mustard	nucleus	17.26	23.39
Bra024037.1-P	Field mustard	cytosol	15.87	20.0
Bra011823.1-P	Field mustard	nucleus	17.06	19.5
Bra011290.1-P	Field mustard	vacuole	20.04	16.5
Bra007837.1-P	Field mustard	nucleus	16.67	16.47
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	20.24	16.16
Bra010268.1-P	Field mustard	cytosol	17.06	15.11
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	16.87	14.41
Bra022060.1-P	Field mustard	nucleus	18.65	14.14
Bra024386.1-P	Field mustard	golgi	20.63	13.56
Bra021031.1-P	Field mustard	nucleus	17.26	13.55
Bra025000.1-P	Field mustard	endoplasmic reticulum	19.44	13.44
Bra027341.1-P	Field mustard	mitochondrion	18.06	13.25
Bra006790.1-P	Field mustard	nucleus, plastid	20.83	12.64
Bra020400.1-P	Field mustard	nucleus	20.44	12.36
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	20.83	11.97
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	21.03	11.88
Bra013814.1-P	Field mustard	golgi	22.02	10.88
Bra019219.1-P	Field mustard	golgi	21.83	10.87
Bra002683.1-P	Field mustard	nucleus	20.83	10.69

Protein Annotations

MapMan:15.3.4.2.2	MapMan:19.2.3.1.1.8	Gene3D:3.30.40.10	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra028566	EnsemblPlants:Bra028566.1
EnsemblPlants:Bra028566.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006508
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
GO:GO:0046872	InterPro:IPR001607	InterPro:IPR013083	InterPro:IPR028889	UniProt:M4EIF1	PFAM:PF00443
PFAM:PF02148	ScanProsite:PS00972	PFscan:PS50235	PFscan:PS50271	PANTHER:PTHR43961	PANTHER:PTHR43961:SF3
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	SUPFAM:SSF57850	UniParc:UPI00025434D6	InterPro:USP_CS
InterPro:USP_dom	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_UBP	SEG:seg	:	:

Description

AT5G10790 (E=7e-222) UBP22 | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding

Coordinates

chrA02:-:1092708..1094413

Molecular Weight (calculated)

57076.2 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.295

Length

504 amino acids

Sequence
(BLAST)

001: MFTPLNDGRI KIKLPETTRC THCSVPHHHK LYICLICRTL SCSSHLLSHA RSNQGHDLAI DVERSELYCS SCVDQVYDPD FDNLLVSKLG SLSVAVVASD
101: GVGGCGVRSS KKRRLLADSQ FLVDRREKWS YPLGLRGLNN LGSTCFMNAV LQALVHAPPL RNFWLSGQHN RDLCPRRSMG LLCLPCDLDV IFSAMFSGDR
201: TPYSPAHLLY SWWQHSTNLA TYEQQDSHEF FISLLDCIHE NEGKSKCLYK DHEECQCITH RAFSGLLRSD VTCTTCGSTS TTYDPFIDIS LTLESAKGTK
301: SRNSGEPSVN SPMMPTLSGC LDLFTRSEKL GPDQKLNCRS CGDKRESSKQ MSMRRLPPLL CLHVKRFEHS LTRKASRKID SYLQYPFRLN MSPYLSSSII
401: GKRFGNRMFA FDGEGEHDGS EFEIFAVVTH SGMLASGHYV TYLRLKGLWY RCDDAWINEV EEEVVRGCEC YMLFYAQERV VQKAHKELSY QVISMADAFP
501: FVDC

Best Arabidopsis Sequence Match ( AT5G10790.1 )
(BLAST)

001: MSARISFLKN PDPCNHLSDY KLRYGTDGYK SFNNLFRCFN DARIKIKLQG IDIPRCSYCS VYQKRLYICL ICRSISCSSH ILLHTQLNKG HDIAIDVERS
101: ELYCCACIDQ VYDSEFDEVV VSKQLFGLGM SVKSGADVVA VRSNKKRRLD SQLIIGSNFL VSPRDRREKW TFPLGLRGLN NLGSTCFMNA VLQALVHAPP
201: LRNFWLSGQH NRDLCPRRTM GLLCLPCDLD VIFSAMFSGD RTPYSPAHLL YSWWQHSTNL ATYEQQDSHE FFISLLDRIH ENEGKSKCLY QDNEECQCIT
301: HKAFSGLLRS DVTCTTCGST STTYDPFIDI SLTLDSMNGF SPADCRKNRY SGGPSVNAIM PTLSGCLDFF TRSEKLGPDQ KLNCQSCGEK RESSKQMSIR
401: RLPLLLCLHV KRFEHSLTRK TSRKIDSYLQ YPFRLNMSPY LSSSIIGKRF GNRIFAFDGE GEYDSSSSSS PSAEFEIFAV VTHKGMLESG HYVTYLRLKG
501: LWYRCDDAWI NEVEEEVVRG CECYMLFYAQ ETVIQKAHKE LSYQVISMAD AFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.