Factsheet for Bra010268.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23262	Canola	nucleus	89.98	93.6
CDY36465	Canola	cytosol	93.5	90.63
Bra024037.1-P	Field mustard	cytosol	59.23	84.25
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	85.59	82.54
AT4G30890.2	Thale cress	cytosol	76.98	79.49
GSMUA_Achr1P11380_001	Banana	cytosol	45.87	69.97
KRH23933	Soybean	cytosol	56.94	59.89
KRH39864	Soybean	cytosol	55.89	59.77
GSMUA_Achr8P09770_001	Banana	cytosol	44.64	59.35
VIT_13s0019g01690.t01	Wine grape	cytosol	56.24	57.87
OQU81355	Sorghum	cytosol, nucleus, plastid	7.56	55.13
Solyc01g068240.2.1	Tomato	cytosol	49.91	53.28
Zm00001d022414_P001	Maize	cytosol	48.86	50.36
PGSC0003DMT400033182	Potato	cytosol	12.3	49.65
PGSC0003DMT400033175	Potato	mitochondrion	14.41	49.1
PGSC0003DMT400033184	Potato	cytosol	15.29	47.54
Os07t0661300-01	Rice	cytosol, plasma membrane	40.6	47.24
TraesCS2A01G127200.3	Wheat	cytosol	47.28	35.96
PGSC0003DMT400033173	Potato	mitochondrion	21.79	34.93
HORVU2Hr1G022340.2	Barley	cytosol	46.57	34.91
TraesCS2D01G129600.2	Wheat	cytosol	46.92	34.63
TraesCS2B01G149000.2	Wheat	cytosol	46.22	34.11
Bra038533.1-P	Field mustard	nucleus	16.52	26.48
Bra010647.1-P	Field mustard	nucleus	16.7	25.54
Zm00001d007096_P007	Maize	mitochondrion	46.4	22.32
Bra011823.1-P	Field mustard	nucleus	16.7	21.54
Bra028566.1-P	Field mustard	cytosol	15.11	17.06
Bra007837.1-P	Field mustard	nucleus	14.94	16.67
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	18.1	16.32
Bra011290.1-P	Field mustard	vacuole	17.22	16.01
Bra022060.1-P	Field mustard	nucleus	16.52	14.14
Bra021031.1-P	Field mustard	nucleus	15.29	13.55
Bra024386.1-P	Field mustard	golgi	17.75	13.17
Bra025000.1-P	Field mustard	endoplasmic reticulum	16.52	12.89
Bra027341.1-P	Field mustard	mitochondrion	15.47	12.81
Bra020400.1-P	Field mustard	nucleus	17.22	11.76
Bra006790.1-P	Field mustard	nucleus, plastid	17.05	11.67
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	17.93	11.63
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	17.75	11.32
Bra019219.1-P	Field mustard	golgi	19.33	10.87
Bra013814.1-P	Field mustard	golgi	18.98	10.59
Bra002683.1-P	Field mustard	nucleus	17.4	10.08

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra010268	EnsemblPlants:Bra010268.1	EnsemblPlants:Bra010268.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4D1B9	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002546EF6	InterPro:USP_CS	InterPro:USP_dom

Description

AT4G30890 (E=3e-214) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA08:+:13543722..13546158

Molecular Weight (calculated)

62526.0 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.478

Length

569 amino acids

Sequence
(BLAST)

001: MPNMTTDKKV FVFGSFTEHE TRSLLDQKPI KAPQSHKEKS VKSIQFGSFN PVTENSPVNS ANGELKKGQT DEAVKSRPSS SHKEDKSFQS AESQKSLDAS
101: RPPSSDKISD NAAKLSGKHS SGEHVEENGI TKEVSERKPP LNNGLAVKEA DPIGLEKLCL SDGESDSLCI ASTSKFQALD TDILSNDSSS GTTIPRKNIR
201: MVPTEPVPAM KDFTPRGLIN AGNLCFLNAT LQALLSCSPF VQLLQGIQLQ DIPKAESPTL AAFSEFISEL DVPSSSSFRN NVAVVESGRP FTPAMFERVL
301: RNFTPDVLNN MSGRPRQEDA QEFLSFIMDQ MHDELLKLRE VSPKLTASKS SVVSSANDDD EWETVGPKNK SAVTRTQSFV PSQLSDIFGG QLRSVVKAKG
401: NKDSATVQPY LLLHLDIHPE AVSTIEDALH LFSAPEDLEG YRASVTGKAG VVSARKSIKI QKLSKIMILH LMRFSYGNQG STKLHKRVHF PLDLNLGRYL
501: LVSPSNGGLK YELVATITHH GRDPSKGHYT TDARRKNNQW LRFDDASVTA IGTKQVLHDQ AYVLFYKQV

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.