Factsheet for Bra011823.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69375	Canola	nucleus	83.22	98.92
Bra010647.1-P	Field mustard	nucleus	81.63	96.77
CDY63898	Canola	nucleus	87.3	96.73
AT4G39910.1	Thale cress	nucleus	81.18	96.5
KRH59329	Soybean	nucleus	74.38	88.89
Bra038533.1-P	Field mustard	nucleus	71.43	88.73
KRH43175	Soybean	nucleus	74.15	88.62
VIT_07s0141g00230.t01	Wine grape	nucleus	74.15	88.62
KRH31299	Soybean	nucleus	73.7	88.08
GSMUA_Achr10P...	Banana	cytosol	68.71	87.83
KRG97572	Soybean	nucleus	73.47	87.8
PGSC0003DMT400032703	Potato	nucleus	71.43	86.07
GSMUA_Achr8P14390_001	Banana	cytosol	68.71	82.79
GSMUA_Achr7P19160_001	Banana	mitochondrion	56.92	82.3
HORVU4Hr1G078590.1	Barley	cytosol	67.8	81.69
TraesCS4A01G406600.1	Wheat	cytosol	67.57	81.42
Os03t0190800-01	Rice	cytosol	67.57	81.42
TraesCS4B01G306100.1	Wheat	cytosol	67.57	81.42
TraesCS4D01G304300.1	Wheat	cytosol	67.35	81.15
Zm00001d028005_P001	Maize	nucleus	67.35	81.15
TraesCS7D01G125700.1	Wheat	nucleus	67.12	80.87
GSMUA_Achr10P...	Banana	nucleus	68.25	80.48
EER92723	Sorghum	nucleus	66.44	80.05
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	63.04	77.65
Bra024037.1-P	Field mustard	cytosol	20.86	23.0
Bra028566.1-P	Field mustard	cytosol	19.5	17.06
Bra010268.1-P	Field mustard	cytosol	21.54	16.7
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	21.09	15.76
Bra011290.1-P	Field mustard	vacuole	21.54	15.52
Bra021031.1-P	Field mustard	nucleus	22.22	15.26
Bra022060.1-P	Field mustard	nucleus	22.22	14.74
Bra007837.1-P	Field mustard	nucleus	17.01	14.71
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	20.63	14.42
Bra027341.1-P	Field mustard	mitochondrion	22.22	14.26
Bra025000.1-P	Field mustard	endoplasmic reticulum	22.9	13.85
Bra024386.1-P	Field mustard	golgi	22.68	13.04
Bra006790.1-P	Field mustard	nucleus, plastid	22.0	11.67
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	22.45	11.29
Bra020400.1-P	Field mustard	nucleus	21.32	11.28
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	22.22	10.99
Bra002683.1-P	Field mustard	nucleus	22.0	9.88
Bra019219.1-P	Field mustard	golgi	21.09	9.19
Bra013814.1-P	Field mustard	golgi	21.09	9.12

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra011823	EnsemblPlants:Bra011823.1	EnsemblPlants:Bra011823.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4D5R6	PFAM:PF00443	ScanProsite:PS00972	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF5
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002546233	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

AT4G39910 (E=9e-207) ATUBP3, UBP3 | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease

Coordinates

chrA01:-:357814..360610

Molecular Weight (calculated)

50221.5 Da

IEP (calculated)

7.255

GRAVY (calculated)

-0.397

Length

441 amino acids

Sequence
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMS CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATNTEHK TSSSSSSPEK IANGPKAPLA NGVHKEPVVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHSEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYMEQLGR YKKLSYRVVF PLELKLSNTV EPYTDVEYSL
301: FAVVFHVESG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT KHNISLSTKH AAKPPSGLDP PFSGVWRSSP
401: APKMIFLSSF IYGCSSWWFL GCSPATSLPH QVHARLRNKE V

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.