Factsheet for VIT_09s0070g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, golgi, nucleus

Predictor Summary:

nucleus 3
golgi 3
mitochondrion 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, nucleus, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00230.t01	Wine grape	nucleus	83.52	81.03
PGSC0003DMT400032703	Potato	nucleus	80.73	78.96
Solyc01g105240.2.1	Tomato	nucleus	80.17	78.42
CDY13770	Canola	nucleus	77.09	77.53
CDX76934	Canola	nucleus	76.54	77.4
Bra038533.1-P	Field mustard	nucleus	76.54	77.18
AT2G22310.1	Thale cress	nucleus	77.65	76.16
Bra010647.1-P	Field mustard	nucleus	79.05	76.08
CDY68864	Canola	nucleus	79.05	76.08
CDX69375	Canola	nucleus	78.77	76.01
AT4G39910.1	Thale cress	nucleus	78.49	75.74
Zm00001d003476_P002	Maize	cytosol	76.82	74.73
EES12269	Sorghum	cytosol	76.54	74.46
Zm00001d025570_P003	Maize	nucleus	76.54	74.46
Os04t0452400-01	Rice	nucleus	75.98	74.11
Os03t0190800-01	Rice	cytosol	75.42	73.77
TraesCS2A01G340100.1	Wheat	cytosol	75.7	73.24
Zm00001d028005_P001	Maize	nucleus	74.86	73.22
HORVU4Hr1G078590.1	Barley	cytosol	74.3	72.68
EER92723	Sorghum	nucleus	74.3	72.68
TraesCS4A01G406600.1	Wheat	cytosol	74.02	72.4
TraesCS4B01G306100.1	Wheat	cytosol	74.02	72.4
TraesCS4D01G304300.1	Wheat	cytosol	73.74	72.13
TraesCS7D01G125700.1	Wheat	nucleus	73.46	71.86
CDY63898	Canola	nucleus	78.21	70.35
HORVU2Hr1G079230.7	Barley	mitochondrion	75.98	65.7
Bra011823.1-P	Field mustard	nucleus	77.65	63.04
TraesCS6A01G203500.1	Wheat	nucleus, plastid	69.55	61.03
TraesCS6D01G187000.1	Wheat	nucleus, plastid	69.55	61.03
Zm00001d016918_P001	Maize	plastid	69.27	59.47
EES07024	Sorghum	mitochondrion	69.55	59.43
HORVU6Hr1G050090.1	Barley	nucleus, plastid	67.6	59.31
CDY68683	Canola	endoplasmic reticulum, vacuole	79.05	58.11
TraesCS6B01G223900.1	Wheat	plastid	67.6	57.76
Os02t0573400-01	Rice	nucleus	65.08	56.14
VIT_11s0118g00280.t01	Wine grape	mitochondrion	17.6	22.26
VIT_13s0019g01690.t01	Wine grape	cytosol	24.58	15.91
VIT_02s0012g01340.t01	Wine grape	nucleus	22.07	15.05
VIT_04s0008g06860.t01	Wine grape	nucleus	22.35	14.47
VIT_19s0093g00560.t01	Wine grape	mitochondrion	23.18	13.07
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	24.58	11.89
VIT_00s0199g00030.t01	Wine grape	vacuole	24.86	9.86
VIT_19s0014g00210.t01	Wine grape	nucleus	24.3	9.73
VIT_04s0069g00760.t01	Wine grape	nucleus	22.91	9.49
VIT_19s0140g00200.t01	Wine grape	plasma membrane	24.58	8.83
VIT_11s0118g00290.t01	Wine grape	nucleus	8.66	8.81
VIT_00s0174g00260.t01	Wine grape	nucleus	24.3	8.73
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	24.02	7.02

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	MEROPS:C19.008	ProteinID:CCB61452	ProteinID:CCB61452.1	UniProt:F6I3D4
EMBL:FN596740	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	TIGR:TC63130	TMHMM:TMhelix	UniParc:UPI000210A843	InterPro:USP_CS	InterPro:USP_dom
ArrayExpress:VIT_09s0070g00500	EnsemblPlantsGene:VIT_09s0070g00500	EnsemblPlants:VIT_09s0070g00500.t01	unigene:Vvi.4818	RefSeq:XP_002275104	RefSeq:XP_002275104.1

Description

No Description!

Coordinates

chr9:-:13792212..13827124

Molecular Weight (calculated)

41073.0 Da

IEP (calculated)

6.973

GRAVY (calculated)

-0.369

Length

358 amino acids

Sequence
(BLAST)

001: MLGFLRKNGD WKGCCGIYFT SIPLFVPLAL YFCVPFREQL LEYYAKNKNL GDPEENLLTC LADLFTQISS QKKKTGVIAP KRFVQRVRKQ NELFRSYMHQ
101: DAHEFLNYLL NELVDILEKE SHVAKTLPDE SLPSGQTANG PRNAPTNGVQ REPLVTWVHK NFQGLLTNET RCLRCETVTA RDETFLDLSL DIEQNSSITS
201: CLKNFSSTET LNAEDKFFCD KCCSLQEAQK RMKIKKPPHI LVIHLKRFKY MEQLGRHKKL SYRVVFPLEL KLANSMEDVD SEYTLFAVVV HVGSGPNHGH
301: YVSLVKSHNH WLFFDDENVE MIDESAVQTF FGSAQEYSSN TDHGYILFYE SLAANGKA

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.