Factsheet for TraesCS2A01G340100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0452400-01	Rice	nucleus	96.22	97.0
EES12269	Sorghum	cytosol	95.41	95.92
Zm00001d003476_P002	Maize	cytosol	95.41	95.92
Zm00001d025570_P003	Maize	nucleus	94.86	95.38
GSMUA_Achr10P...	Banana	cytosol	83.51	89.57
HORVU2Hr1G079230.7	Barley	mitochondrion	98.65	88.16
VIT_07s0141g00230.t01	Wine grape	nucleus	85.95	86.18
KRG97572	Soybean	nucleus	85.41	85.64
KRH31299	Soybean	nucleus	85.14	85.37
PGSC0003DMT400032703	Potato	nucleus	84.32	85.25
KRH59329	Soybean	nucleus	84.59	84.82
KRH43175	Soybean	nucleus	84.32	84.55
GSMUA_Achr8P14390_001	Banana	cytosol	83.24	84.15
Solyc04g056290.2.1	Tomato	nucleus	83.78	84.01
GSMUA_Achr7P19160_001	Banana	mitochondrion	67.3	81.64
GSMUA_Achr10P...	Banana	nucleus	81.62	80.75
TraesCS4A01G406600.1	Wheat	cytosol	78.65	79.51
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	73.24	75.7
TraesCS6A01G203500.1	Wheat	nucleus, plastid	76.76	69.61
TraesCS2A01G516100.1	Wheat	mitochondrion	24.05	24.05
TraesCS1A01G329200.2	Wheat	plastid	25.41	14.48
TraesCS6A01G264800.1	Wheat	nucleus	24.86	12.53
TraesCS2A01G127200.3	Wheat	cytosol	23.51	11.63
TraesCS7A01G147900.1	Wheat	nucleus	25.95	10.42
TraesCS6A01G192600.1	Wheat	plasma membrane	27.57	10.41
TraesCS7A01G282200.4	Wheat	plastid	27.57	10.31
TraesCS1A01G192900.1	Wheat	cytosol	18.11	10.0
TraesCS5A01G246000.3	Wheat	vacuole	25.68	9.88
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	25.68	8.87
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	25.14	8.77

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
EnsemblPlantsGene:TraesCS2A01G340100	EnsemblPlants:TraesCS2A01G340100.1	InterPro:USP_CS	InterPro:USP_dom	TIGR:cd02663	SEG:seg

Description

No Description!

Coordinates

chr2A:-:574976425..574980459

Molecular Weight (calculated)

42004.9 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.407

Length

370 amino acids

Sequence
(BLAST)

001: MVMGASGSKL EKALGDQFPE GERYFGLENF GNTCYCNSVL QALYFCTPFR EQLLEYYMNN KNPGDAEENL LTCLADLFMQ VSQSKKKTGV IAPKRFVQRV
101: KKQNELFRSY MHQDAHEFLN FLLNELVDIL EKESSAAKDS PQSSSPEKVP NGAVQPLANG VKKEPPVTLV HKNFQGILTN ETKCLRCETV TARDETFFDL
201: SVDIEQNSSI TSCLKNFSST ETLNAEDKFF CDKCCSLQEA QKRMKIKKAP HILVIHLKRF KYIEQLGRYK KLSYRVVFPM ELKISSTSDD VDTEYSLFAV
301: VVHVGSGPNH GHYVSLVKSH NHWLFFDDEN VEMVEESTLQ TFFGSSHEYS GNTDHGYILF YEGLGGKCLG

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.