Factsheet for TraesCS5A01G246000.3

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, plastid, secretory
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G493700.1
TraesCS2B01G521700.1
TraesCS2D01G493600.1
TraesCS4A01G246100.1
TraesCS4B01G069300.1
TraesCS4D01G068100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	TraesCS2A01G493700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2B01G521700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2D01G493600.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS4A01G246100.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4B01G069300.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4D01G068100.1	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	87.63	93.15
TraesCS5B01G243400.1	Wheat	vacuole	82.64	86.79
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	63.41	82.77
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	53.64	55.6
Zm00001d020769_P005	Maize	nucleus	43.56	48.95
OQU89635	Sorghum	vacuole	43.97	46.38
TraesCS7A01G282200.4	Wheat	plastid	45.53	44.29
GSMUA_Achr10P...	Banana	nucleus	17.88	42.36
GSMUA_Achr7P19010_001	Banana	nucleus	19.54	40.87
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	14.86	37.05
GSMUA_Achr10P...	Banana	golgi	17.05	36.44
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	28.07	36.0
GSMUA_Achr5P22990_001	Banana	vacuole	33.37	35.71
CDY14564	Canola	golgi	28.17	35.56
CDY08792	Canola	vacuole	27.65	35.51
Bra024386.1-P	Field mustard	golgi	27.96	35.07
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	26.4	34.32
VIT_00s0199g00030.t01	Wine grape	vacuole	29.31	31.23
KRH74502	Soybean	golgi, plasma membrane, vacuole	30.04	31.18
KRH69660	Soybean	golgi	29.83	30.6
KRH52893	Soybean	extracellular, golgi, vacuole	27.75	30.07
KRH16837	Soybean	golgi	32.43	29.86
KRH72452	Soybean	golgi, plasma membrane	31.39	29.15
CDY11021	Canola	golgi	29.52	28.15
CDX92643	Canola	golgi	29.52	28.04
AT4G24560.1	Thale cress	extracellular, golgi	29.31	27.98
Bra019219.1-P	Field mustard	golgi	29.31	27.87
CDY03441	Canola	golgi	29.31	27.84
Solyc04g076210.2.1	Tomato	nucleus	31.39	27.48
CDY34291	Canola	golgi	29.0	27.35
Bra013814.1-P	Field mustard	golgi	29.0	27.35
KRH62182	Soybean	golgi, vacuole	32.22	27.24
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	34.3	26.94
TraesCS4A01G406600.1	Wheat	cytosol	9.98	26.23
TraesCS2A01G340100.1	Wheat	cytosol	9.88	25.68
TraesCS2A01G516100.1	Wheat	mitochondrion	9.25	24.05
TraesCS6A01G192600.1	Wheat	plasma membrane	24.32	23.88
TraesCS6A01G203500.1	Wheat	nucleus, plastid	9.77	23.04
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	23.7	21.51
TraesCS1A01G329200.2	Wheat	plastid	13.51	20.03
TraesCS6A01G264800.1	Wheat	nucleus	13.2	17.3
TraesCS7A01G147900.1	Wheat	nucleus	15.59	16.29
TraesCS1A01G192900.1	Wheat	cytosol	9.98	14.33
TraesCS2A01G127200.3	Wheat	cytosol	10.39	13.37
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	13.72	12.32

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G246000
EnsemblPlants:TraesCS5A01G246000.3	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:459333703..459340078

Molecular Weight (calculated)

105012.0 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.407

Length

962 amino acids

Sequence
(BLAST)

001: MASFFAALVA IVVVALVAVM RRAAARKEDV RRTAWIAADQ AQFAERDAFY YYDHHAAPDW TAPDATECTA PDATEWTAPD ATEWTAPQVA WPPVEQVAAP
101: PVAWPPVEQV AATPVAWPPV EQMAATPVAW PVVEEVAATP VAWPAVEEVA ATPVAWPPVE KVAATPVDWP PAEKVAALPV AWPPAVKVAA PQVAWPPVEQ
201: VAATQVAWPL VDQVAAPEVA WPRDVHVAAP RLEQEATTEP TLAAAAGKKG PCAVCRTPTT FRCKRCKGVK YCAVKCQIAH WRQGHKDECH PVSADAREDT
301: TIEASSTKKI GRTSSDEESV VTGAEQAADS KEMPHEKASN TSEASEQDNK EFTFPQVTGH AESADCSSSP TFGKPCKVEG ASISENGSHT QIPAACDPSE
401: KAEIRVVVPD NLPTTKSLVR QQTAPTVVRH NPSESALFPY ERFVKLYNFD KVELRPFGLC NLGNSCYANV VLQCLAFTRP LTAYFLEGLH SKHCSQKEWC
501: FLCEFQKLIV EGKRGQSQLS PTGILSHLSD IGSSFGPGKE EDAHEFLRYA IDTMQSASMK EANANGAHKL AEETTLIQLM FGGYLRSKIK CTKCGVSSEH
601: CERMLDLTVE IDGDISTLEE ALHRFTSTEV LDGDNRYHCI RCNSYERGKK KLTISEAPNI LTIALKRYQS GMFGKINKAI RFPEYLNLSS YMSTTDDCSP
701: VYRLYAVVVH RDVMNSSISG HYICYVKDSQ GKWYEMDDSQ VKPVSLKNVR SECAYMLLYA RCSPRAPRSL RKLIIAQGLS HTRKARQTAG PASTCLEGRS
801: HSSRHQVLEP TSTSEGSSLF SSSDVGSSGN LSSDNTDSAK NPGSSDQMHP VSTVVMPEEH SRQMSSLNPS SSTQYADQGE VDRLHQLKHQ TSKGAWDEGC
901: EAPSFFYVDQ GKYPGSSSSS DSSSRSRRSI SSSSSCNLTG QRNCRMVGEV DHGPGEGQGH FK

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.