CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42751
KRH58850

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	KRH42751	AT4G13930.1	23232097
AT4G24560.1	KRH58850	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52893	Soybean	extracellular, golgi, vacuole	71.97	92.23
KRH16837	Soybean	golgi	60.46	65.84
KRH72452	Soybean	golgi, plasma membrane	59.23	65.06
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	53.43	49.63
AT4G24560.1	Thale cress	extracellular, golgi	39.81	44.94
CDY03441	Canola	golgi	39.98	44.92
CDY34291	Canola	golgi	40.07	44.71
Bra013814.1-P	Field mustard	golgi	39.89	44.51
CDY11021	Canola	golgi	39.46	44.5
CDX92643	Canola	golgi	39.46	44.32
GSMUA_Achr10P...	Banana	golgi	17.4	44.0
Bra019219.1-P	Field mustard	golgi	39.1	43.97
GSMUA_Achr5P22990_001	Banana	vacuole	33.83	42.83
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	14.24	41.97
KRH74502	Soybean	golgi, plasma membrane, vacuole	34.18	41.96
KRH69660	Soybean	golgi	34.36	41.68
GSMUA_Achr10P...	Banana	nucleus	14.76	41.38
Zm00001d050489_P001	Maize	nucleus	16.61	41.36
GSMUA_Achr7P19010_001	Banana	nucleus	16.08	39.78
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	24.43	37.72
OQU80649	Sorghum	nucleus	26.36	37.22
GSMUA_AchrUn_...	Banana	golgi, vacuole	32.25	36.23
Os08t0478500-01	Rice	plastid	30.58	35.58
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.91	35.45
TraesCS7A01G282200.4	Wheat	plastid	30.23	34.78
TraesCS7B01G179000.2	Wheat	plastid	30.05	34.44
TraesCS7D01G280800.4	Wheat	plastid	29.88	34.27
Zm00001d020769_P005	Maize	nucleus	25.57	34.0
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	26.71	33.59
TraesCS5B01G243400.1	Wheat	vacuole	26.98	33.52
KRH15706	Soybean	golgi, plasma membrane, vacuole	21.35	33.33
OQU89635	Sorghum	vacuole	26.36	32.89
KRH05330	Soybean	golgi, plasma membrane	21.18	32.7
TraesCS5A01G246000.3	Wheat	vacuole	27.24	32.22
KRH52289	Soybean	golgi	20.65	32.02
KRH61621	Soybean	golgi	20.83	31.94
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	27.77	31.82
KRH72298	Soybean	cytosol, plastid	13.27	29.72
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	24.6	28.28
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	24.52	28.21
KRG97572	Soybean	nucleus	9.14	28.18
KRH31299	Soybean	nucleus	8.96	27.64
KRH59329	Soybean	nucleus	8.88	27.37
KRH43175	Soybean	nucleus	8.88	27.37
KRH15753	Soybean	nucleus	10.54	21.66
KRH05289	Soybean	nucleus	10.54	21.62
KRH43852	Soybean	nucleus	12.13	21.53
KRH13611	Soybean	nucleus	12.3	21.47
KRH03615	Soybean	cytosol	10.72	20.61
KRH20191	Soybean	plastid	10.72	20.54
KRH23933	Soybean	cytosol	9.23	19.41
KRH39864	Soybean	cytosol	9.05	19.36
KRH03060	Soybean	nucleus	14.41	18.16
KRH39541	Soybean	nucleus	11.16	17.19
KRH74417	Soybean	nucleus	10.9	17.15

Protein Annotations

EntrezGene:100795674	MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EMBL:ACUP02002227	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G091700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872
InterPro:IPR002893	InterPro:IPR028889	UniProt:K7KJ19	EnsemblPlants:KRH62182	ProteinID:KRH62182	ProteinID:KRH62182.1
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI00029567C1
InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:8089488..8097152

Molecular Weight (calculated)

124191.0 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.489

Length

1138 amino acids

Sequence
(BLAST)

0001: MRVTGDLGFS SLVLVVVCVV LPVIGFVIRR KWQVSEARKD EIKRLLVLAA EETARAEKEA SYEYGTAVSA APSNLCAVCY FPATARCAQC KSVRYCSFEC
0101: QTVHWRQGHK LECRPPSTTC WSDDVASDHG RKLVEQGYSG IHVEKSESEG KECKVASEKS PISDICFSPK VSPGKDGNIR VESLAEGNIT DSNSELSSNS
0201: FSGFSASTGS NDSSDDSSVC ESIISNEHDG SKGHTFVDPT LDIPDNTSDD CMGVTMSTSP KFATLVDSVD GFSTMHKLNH TGPGFSKEES KLASNGNPGS
0301: SMWKGKTIEP STVVSGFWDK ALDSRGIKDD TKNDTHPSCS DESTGKRTVS ESSFHFSFST MSPLHVRDTK TNDSVSDDAF PNCIGNDMAS SGSASSENDK
0401: MNSSKGRNFS FINSKVSSVR SYVTPSGSES DQLESKDSSG PPLSSFSPQS SSVDKNSVCA DALNFHILQS TGSKVSNHVV DNRGSTLKST EIGFLTRELA
0501: DSNLASGTEE HSHSSTKQGN NDIESGTQTV TSSQVASCSA NSKSGLKTSV LKVVDQFRGS NLSKHFPLAV GSDIAGRHND KSFFPYELFV KLYNSNKVEL
0601: CPFGLINCGN SCYANAVLQC LAFTPPLTAY LLQGSHSKSC ANKKWCFTCE FERLILKSKD TKSAVSPMGI ISHLQNIGSQ LANGREEDAH EFLRHVIDTM
0701: QSVCLMEAGV NALGSLEEDT TLMGQTFGGY LLSKIKCMRC GGKSERQERM MDLTVEIEGE ITTLVEALRR FTSTETLDGE NKYHCVRCKS YEKAKKKLTV
0801: SEAPNVLTVA LKRFQSGKFG KLNKPIQFPE ILNLAPFMSG TSDKSPIYRL YGVVVHLDIM NAAFSGHYVC YVKNIQNKWF KVDDSVVTAV ELDRVLTKGA
0901: YMLFYARCSP RAPRLIRNRI LSPDSKRKVS GKTLTTKARS ISTNSGVAEH VNSSISPDDS PALDSFYSKF HHLKRILEED SSSDNSSLIS SNSDEGSCST
1001: DSTRDSTSTD DFSEYLFGDS GNGWSSVWRN SDSDTSSSSS SSPLNLRHSP LSDMDRYDSV SPDAEGSRGI DVSRLSSNTT LQHRKLDSRI SSNSSSSRET
1101: DSCLKLGSNH FNDIDYGVLC RKPRKRTDLY FINREFRS

Best Arabidopsis Sequence Match ( AT5G65450.1 )
(BLAST)

001: MMLVFLLIRR QWRSASVRRE EVIRLIALAT EESYLAEEVR PATVDYGGDS VSDVYRCAVC LYPTTTRCSQ CKSVRYCSSK CQILHWRRGH KEECRSPDYD
101: EEKEEYVQSD YDAKESNVDF PSRGTAYESS SNVSVDVACD MSTSRPSIHK VQPRSEAVDF TTSLNIKDNL YETRPLSRKK SRNRTDKVES ASNYSKGKTD
201: AKLRKLGNQN SRRSGDSANM SISDQFLSVG FEEEMNALKH ERITSEPSSA SAAMSSSSTL LLPSKANSKP KVSQASSSGL KTSVQKVVQH FRPPQSSKKS
301: QPSSSIDEMS FSYELFVKLY CDRVELQPFG LVNLGNSCYA NAVLQCLAFT RPLISYLIRG LHSKTCRKKS WCFVCEFEHL ILKARGGESP LSPIKILSKL
401: QKIGKHLGPG KEEDAHEFLR CAVDTMQSVF LKEAPAAGPF AEETTLVGLT FGGYLHSKIK CMACLHKSER PELMMDLTVE IDGDIGSLEE ALAQFTAYEV
501: LDGENRYFCG RCKSYQKAKK KLMILEGPNI LTVVLKRFQS DNFGKLSKPI HFPELLDISP YMSDPNHGDH PVYSLYAVVV HLDAMSTLFS GHYVCYIKTL
601: DGDWFKIDDS NVFPVQLETV LLEGAYMLLY ARDSPRPVSK NGGRKSKQRR NLAAIPSRKG NKKQRDGDNN SLLPRVDWSS GSLSSMFSSS DTTSSCSTKD
701: SSGIENLSDY LFGGVEPVWK WDRHNKSQTF D

Arabidopsis Description

UBP17ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.